Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 822 a.a., DNA gyrase subunit B from Acinetobacter radioresistens SK82

 Score =  405 bits (1042), Expect = e-117
 Identities = 240/557 (43%), Positives = 332/557 (59%), Gaps = 19/557 (3%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           Y++ +I+VL GL+ VR+RPGMY     D T  +H+  EV+DNS+DEALAG+  +I V +H
Sbjct: 19  YDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDEILVTIH 78

Query: 61  ADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
            D+S+ V D+GRG+P DIHPEE VS  E+IL  LHAGGKF + +Y+ SGGLHGVG+SVVN
Sbjct: 79  EDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLHGVGVSVVN 138

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFS 180
           ALS ++E+ V+R GQ++E  ++HG     L V G   R  TGT V FWP  + F    F+
Sbjct: 139 ALSSKLELTVQRAGQIHEQEYQHGVPQYPLRVVGQTER--TGTKVRFWPSAETFSQTIFN 196

Query: 181 VSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTG 240
           V  L   LR  + L  G+ I+  D+  N EH + YE GL +++    +G   L E     
Sbjct: 197 VDILARRLRELSFLNAGVRIVLCDERINLEHVFDYEGGLSEFVKYINEGKNHLNE---IF 253

Query: 241 EFTAQTE---AATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEF 297
            FT Q E       A+ W     E +   + N IP   GGTH+ G R  L   +  + E 
Sbjct: 254 HFTTQAENGIGVEVALQWNDSYQENV-RCFTNNIPQKDGGTHLAGFRAALTRGLNSYLEN 312

Query: 298 RNLLPR-GVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSL 356
            N+L +  V +TG+D  +    ++S+K+ DP+F+ QTKE+L S +    V   +  AFS 
Sbjct: 313 ENILKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKPAVEQAMNKAFSE 372

Query: 357 WLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASGPA-LPGKLTDCTVQDLNRTE 413
           +L E P  A+ +A   I  A A    R ++++ R+K A   A LPGKL DC  +D   +E
Sbjct: 373 YLLENPAAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSE 432

Query: 414 LFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL--GID 471
           LFLVEGDSAGGSAKQ R+R+ QA++PL+GKILN      D++++S EV  +  AL  GI 
Sbjct: 433 LFLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDRMISSAEVGTLITALGCGIG 492

Query: 472 PDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDC 531
            +  N + LRY K+ I+ DAD DG HI TLL   F R    LV+ GH+Y+A PPLY++  
Sbjct: 493 REEYNPDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPLYKLKK 552

Query: 532 GKEVFYALDDQEKEGVL 548
           GK+  Y  D+   E  L
Sbjct: 553 GKQEQYIKDNDALETYL 569



 Score = 67.0 bits (162), Expect = 3e-15
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 551 LSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRA 610
           L   +  + +QR+KGLGEMN  QL ETTMDP  R ++Q+TIDDA   D M   L+G    
Sbjct: 746 LQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTIDDAIEADRMFSCLMGDD-V 804

Query: 611 DDRRAWLQRNGDMAEV 626
           + RRA+++ N   A++
Sbjct: 805 EPRRAFIEENALNADI 820