Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 884 a.a., DNA gyrase subunit A from Pseudomonas simiae WCS417

 Score =  396 bits (1017), Expect = e-114
 Identities = 266/771 (34%), Positives = 420/771 (54%), Gaps = 72/771 (9%)

Query: 20  EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKY 79
           + +YL+Y+M VI+ RALP   DGLKPV RR+++AMSELG   +  YKKSAR VGDV+GKY
Sbjct: 18  KQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKY 77

Query: 80  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLS 139
           HPHGD+A Y+ +V MAQPFS RY LVDGQGN+G+ D   + AAMRYTE +++K A  LL+
Sbjct: 78  HPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNA-AAMRYTEVRMTKLAHELLA 136

Query: 140 ELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIH 199
           +L + TVDW PN+DGT   P ++P ++P++L+NG +GIAVGMAT+IPPHN+ EV D  + 
Sbjct: 137 DLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLA 196

Query: 200 LIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAVWCKEGSD--- 256
           LIDNP   + +LMQY+ GPDFPT A II     + + YR+GRG I MRA    E  D   
Sbjct: 197 LIDNPELTVDELMQYIPGPDFPT-AAIINGRAGIIEAYRTGRGRIYMRARSIIEDIDKVG 255

Query: 257 ----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVD 312
               IVIT LP+Q++ A+L+E+IA  ++ KKL  + +LRDESD +   R+VI  R   V 
Sbjct: 256 GRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDG-MRVVIELRRGEVP 314

Query: 313 CDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRETVRSRLQYRLD 372
            ++++N+L+A T L+  F +N+  + +D RP++  L  +L  ++  RRE V  R  + L 
Sbjct: 315 -EVILNNLYAQTQLQSVFGINVVAL-IDGRPRILNLKDLLEAFVRHRREVVTRRTVFELR 372

Query: 373 KVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMA---------------------- 410
           K   R HIL+G  +A  N+D VI +I+    P     A                      
Sbjct: 373 KARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVVAMVERAGADS 432

Query: 411 ---------------RFDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEEL 455
                          ++ L+  QA AIL+ +L  L  LE  K+  E  E+  +  +L  +
Sbjct: 433 CRPETLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGELIRI 492

Query: 456 LGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWI 515
           L S  RL  ++++E++    ++GD RR+ +++      LT  D++P E   V +S  G+ 
Sbjct: 493 LSSAVRLMEVIREELEVIRAEYGDVRRTEILDAR--LDLTLGDMIPEEERVVTISHGGYA 550

Query: 516 R-------HAKGHDVDCQSLNYKAGDNYLTH-ACGKSNQQAVFLGSDGRSYSLESHTLPS 567
           +        A+      +S      ++Y+ H     S+   +   S G+ Y L+++ +P 
Sbjct: 551 KTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYWLKTYEIPE 610

Query: 568 A--RGQGEPITGRLNVAEGTTIRQVVMGEE-DQLWLVGSDAGYGFVCKGD-DLLSKNRSG 623
           A    +G P+   L +     I  ++  EE  +   +      G V K   +  S+ RS 
Sbjct: 611 ASRAARGRPLVNLLPLDSDEYITTMLPVEEYTEGHFIFMATAKGTVKKTPLESFSRQRSV 670

Query: 624 KALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIINIPA 682
             +    +  +V+    I D +  E++  ++ G++  F   D+  + +  +G + + +P 
Sbjct: 671 GLIALELDEGDVLISAAITDGER-EVMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPE 729

Query: 683 AKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERGRRGAL 733
                 ++++S  M++P+  S  L A +R  G + +  +    +RG +G +
Sbjct: 730 G-----QKLIS--MLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVI 773



 Score = 36.2 bits (82), Expect = 8e-06
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 8/149 (5%)

Query: 527 SLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTT 586
           +L    GD  L  A     ++ V L SDG   +    +   A G+       + + EG  
Sbjct: 674 ALELDEGD-VLISAAITDGEREVMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEGQK 732

Query: 587 IRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSE----VMTPQVIA 642
           +  +++ EE    L  S+ GYG      +     R G+ +I +  N      V   QV  
Sbjct: 733 LISMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNDRNGRLVGAVQV-- 790

Query: 643 DLDNDEILAITNQGRMLLFPIKDLPQLSK 671
            LD +EI+ I++QG ++   + ++  L +
Sbjct: 791 -LDGEEIMLISDQGTLVRTRVAEVSSLGR 818