Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 881 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Variovorax sp. SCN45

 Score =  358 bits (918), Expect = e-103
 Identities = 265/824 (32%), Positives = 425/824 (51%), Gaps = 92/824 (11%)

Query: 11  EQLP--LRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68
           E LP  L +    +YL+Y+M VI+ RALP   DGLKPV RR+++AM EL    +  YKKS
Sbjct: 7   ETLPISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKS 66

Query: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEA 128
           AR VGDV+GKYHPHGD + Y+ +V +AQ FS R+ LVDGQGN+G+ D   + AAMRYTE 
Sbjct: 67  ARIVGDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNA-AAMRYTEI 125

Query: 129 KLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPH 188
           +L+K A  +L+++ + TVD+Q N+DG+ +EPK+LP++LP++L+NG  GIAVGMAT+IPPH
Sbjct: 126 RLAKIAHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMATNIPPH 185

Query: 189 NVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRA 248
           N+ EV DA ++L+ NP A + +LM+ V  PDFPT A II     ++  YR+GRG + MRA
Sbjct: 186 NLNEVVDACLYLLRNPEASIDELMEIVPAPDFPT-AGIIYGINGVKDGYRTGRGKVVMRA 244

Query: 249 VWCKEGSD------IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302
               E  D      I++  LP+QV+   L E++A  +  KK+  +  ++DESD ++  R+
Sbjct: 245 KCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESD-KSGMRL 303

Query: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362
           VI  +   V  ++++N+L+  T L+ +F +N+  + +D +P++  L  ++  ++  RRE 
Sbjct: 304 VIELKRGEVP-EVVLNNLYKQTQLQDTFGINMVAL-VDGQPKLCNLKDLIQVFLQHRREV 361

Query: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR-------- 411
           V  R  + L K   R H+L+GL +A  N+DE I IIR    P   KA LM R        
Sbjct: 362 VTRRTVFNLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVR 421

Query: 412 ----------------------------------FDLTDIQADAILDTKLRHLAKLEEMK 437
                                             + L+D QA  IL  +L+ L  LE+ K
Sbjct: 422 EMLTRSRADGGVINADDYRPEGLEREYGMGGDGLYRLSDTQAQEILQMRLQRLTGLEQDK 481

Query: 438 IRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDDR---RSPLVEREEAKAL 494
           I  E  ++  E   L ++L    R++ ++ +E+     +FG  +   R  LVE   A  L
Sbjct: 482 IVAEYKDVMAEIDDLLDILAKPERVSTIIGEELGTIKQEFGQSKIGARRSLVE-HSAYDL 540

Query: 495 TERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKA-------GDNYLTHA-CGKSNQ 546
           +  DL+    + V LS  G+I+     +   Q    +         D+++       ++ 
Sbjct: 541 STEDLITPTDMVVTLSHSGYIKSQPLGEYRAQKRGGRGKQATATKDDDWIDQLFIANTHD 600

Query: 547 QAVFLGSDGRSYSLESHTLPS-ARG-QGEPITGRLNVAEGTTIR--QVVMGEE-----DQ 597
             +   + GR Y L+   +P+ +RG +G PI     + EG  I     + GE+     DQ
Sbjct: 601 YILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQ 660

Query: 598 LWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGR 657
              + +  G       D+  +  + G   +NL E  + +    + D  +D ++  ++ G+
Sbjct: 661 YVFMATSMGTVKKTALDEFNNPRKGGIIAVNLDE-GDYLIGAALTDGKHD-VMLFSDGGK 718

Query: 658 MLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKV 717
            + F  +D+  L    G     +     +  + V++ L+   +  S+ L A +   G + 
Sbjct: 719 AVRFDEEDVRPL----GRNARGVRGMSLEAGQGVIAMLVAEDEQQSV-LTATENGYGKRT 773

Query: 718 SDLDNFRGERGRRGALLPRGLQRVTAIEIETSAEPESTPHSEDE 761
           S  +  R  RG +G +  +  +R   +   T        HS+DE
Sbjct: 774 SITEYTRHGRGTKGMIAIQQSERNGKVVAATLV------HSDDE 811