Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 801 a.a., DNA topoisomerase IV subunit A (EC 5.99.1.3) from Variovorax sp. SCN45

 Score =  533 bits (1372), Expect = e-155
 Identities = 318/801 (39%), Positives = 470/801 (58%), Gaps = 74/801 (9%)

Query: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGL-------S 60
           DG   L L  + + AYL Y++ V+  RALP + DG KPVQRRI+Y+MS +GL       +
Sbjct: 14  DGDTTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGTNGT 73

Query: 61  ASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 120
             AK  KSAR VGDVLG++HPH D A Y+A+V MAQ FS RYPLVDGQGN+G+ D   + 
Sbjct: 74  VGAKPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGA- 132

Query: 121 AAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180
           AAMRYTEA+L++   +LL E+ +GTVD+ PN+DG+ +EP++LPARLP  LLNG +GIAVG
Sbjct: 133 AAMRYTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAVG 192

Query: 181 MATDIPPHNVREVADATIHLI-DNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRS 239
           +AT+IP HN+RE+ADA + LI  N      +L   V GPD+P  A+II+   ++   YR+
Sbjct: 193 LATEIPSHNLREIADACVALIKSNGKLSEEELFAIVPGPDYPGGAQIISNASDIADAYRT 252

Query: 240 GRGSIKMRAVWCKEGS-----DIVITALPHQVSGAKLLEQIA------------------ 276
           GRGS+K+RA W  E        +V+  LP  VS  K+LE+I                   
Sbjct: 253 GRGSLKVRARWKIEELARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSADQ 312

Query: 277 AQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNM 336
            Q++A  L +++ +RDES  +   R+V  P+++R+  D  +  L A T LE S  +NL M
Sbjct: 313 TQLKAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQDEFITTLLAQTSLETSSPINLTM 372

Query: 337 IGLDNRPQVKGLVQILSEWISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIE 396
           +G+D +P  K L Q+L+EWI+FR  TV  R ++RL+KVL R+HIL+G  +  LN+DEVI 
Sbjct: 373 VGIDGKPTQKSLRQMLNEWIAFREVTVEKRSRHRLNKVLDRIHILEGRQLVLLNIDEVIA 432

Query: 397 IIRNEDDPKAVLMARFDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELL 456
           IIR  +DPKA L+ARF+L+D QA+ IL+ +LR LA+LE +KI  E   L  E+KKLE++L
Sbjct: 433 IIRAAEDPKAALIARFNLSDRQAEDILEIRLRQLARLEAIKIEQELSGLRDEQKKLEDIL 492

Query: 457 GSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWIR 516
           GS   L  LL KEI+ADA  F D RR+ +  + E +A+ E  ++  E +TV++S+KGW+R
Sbjct: 493 GSPAALRRLLVKEIEADAKTFEDPRRTLI--QAEKRAVAEVKVV-DEPVTVIVSQKGWVR 549

Query: 517 HAK------------GHDVDCQSLNYKAGDN-YLTHACGKSNQQAVFLGSDGRS---YSL 560
             K            G+       ++K+GD+ Y    C   +   VF  +  +S   Y++
Sbjct: 550 AQKGWASEKAAAANGGNGASAPEYSFKSGDSLYGAFECRSVDTLLVFGSAKDKSVRVYTV 609

Query: 561 ESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKN 620
              +LP ARG G+P+T  + +  GT +     G      L+ +  GYGF+   ++++S+ 
Sbjct: 610 PVASLPGARGDGQPVTTLIELDAGTHVTHFFAGPVGASVLLANTGGYGFIATVENMMSRQ 669

Query: 621 RSGKALINLPENSEVMTPQVIADLDNDE-------ILAITNQGRMLLFPIKDLPQLSK-G 672
           R GKA I++ E  ++  P ++      E       +   +  GR+L F I +L  L K G
Sbjct: 670 RGGKAFIDVGEGEQLCRPSLVGGASGAEPMPAATHVACASTGGRILTFDITELKSLPKGG 729

Query: 673 KGNKIIN------IPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGE 726
           +G  +I+      +  A A TR   +     + +GA       +R+  L++  L+N RG 
Sbjct: 730 RGLTLIDLEPKDTLAGAAAYTRSVKIEG---IGRGAK------EREETLEIRTLNNARGS 780

Query: 727 RGRRGALLPRGLQRVTAIEIE 747
           R R+G     G +  + + ++
Sbjct: 781 RARKGKAADLGFKPSSIVRVQ 801