Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 911 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Sphingobium sp. HT1-2

 Score =  375 bits (964), Expect = e-108
 Identities = 250/696 (35%), Positives = 376/696 (54%), Gaps = 56/696 (8%)

Query: 20  EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKY 79
           + +YL+Y+M VI+ RALP + DGLKPV RRI+++  E G   +  Y+KSAR VG+V+GKY
Sbjct: 23  KSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSAQESGFVYNRPYRKSARLVGEVMGKY 82

Query: 80  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLS 139
           HPHGDS+ Y+A+  M Q +S R PL+DGQGN+G+ D P   AAMRYTEA+L+K A  LL 
Sbjct: 83  HPHGDSSIYDALARMTQDWSMRVPLIDGQGNFGSMD-PDPPAAMRYTEARLAKVATALLE 141

Query: 140 ELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIH 199
           +L + TVD+ PN+D +  EP++LPAR P++L+NG  GIAVGMAT+IPPHN+ EV  A + 
Sbjct: 142 DLDKDTVDFTPNYDASESEPQVLPARFPNLLVNGAGGIAVGMATNIPPHNLGEVLRACLA 201

Query: 200 LIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAVW-CKEG---- 254
            I+NP     +L+Q V GPDFPT A +I         Y +GRGSI MRA    +EG    
Sbjct: 202 YIENPAISTDELIQIVPGPDFPT-APLILGQSGARNAYHTGRGSILMRARHEVEEGRGDR 260

Query: 255 SDIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDCD 314
             IV+T++P+QV  + L+E+IA   + K++  + D+RDES  E   RIV+  + +    D
Sbjct: 261 RSIVLTSIPYQVGKSGLVEKIAEAAKDKRIEGISDIRDESSREG-VRIVMDLKRDATP-D 318

Query: 315 LLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRETVRSRLQYRLDKV 374
           +++N L+ +T  + SF  N+  I    RP++ GL  I+  ++ FR E +  R ++ L+K 
Sbjct: 319 VVLNQLWRNTPAQSSFPANMLAI-RGGRPELLGLRDIIEAFVKFREEVITRRTKFELNKA 377

Query: 375 LARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR-------------------- 411
             R HIL GL++A  NLDEV++IIR    P A    L+AR                    
Sbjct: 378 RDRAHILLGLVVAVTNLDEVVKIIRGSASPAAARESLLAREWPIGEIAPYLALVEAIETE 437

Query: 412 -----FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLL 466
                + L+D+Q  AILD +L  L  L   +I  E  EL +   +   +LG   +L  ++
Sbjct: 438 VSGESYKLSDVQVRAILDLRLHRLTALGRDEIGKELAELAEAIAEYLAILGDRVKLYAVM 497

Query: 467 KKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQ 526
           ++E +A   +F   R S  V    A  + + DL+  E + V ++ +G+I+         Q
Sbjct: 498 REEFEAIESEFATPRVS--VIAPAADGIDDEDLIEREEMVVTVTVQGYIKRTPLESFRAQ 555

Query: 527 SLNYKAGDNYLTH--------ACGKSNQQAVFLGSDGRSYSLESHTLPSA--RGQGEPIT 576
               K      T             ++   +F  + G+ Y L+   LP      +G P+ 
Sbjct: 556 GRGGKGRSGMATKDEDAVTELFVTSTHTPVLFFSTAGKVYRLKVWRLPEGGPATRGRPMI 615

Query: 577 GRLNVAEGTTIRQVV-MGEEDQLWL---VGSDAGYGFVCKG--DDLLSKNRSGKALINLP 630
             L +A G TI+ V+ + E+++ W    V      G V +   D   +   +GK  +   
Sbjct: 616 NLLPLAPGETIQTVLPLPEDEESWKELHVMFATANGTVRRNSMDAFANVPSNGKLAMRFD 675

Query: 631 ENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDL 666
           E S+     V    + D++L  T QGR + F   D+
Sbjct: 676 EGSDDRLIGVALLTEEDDVLLATRQGRAIRFAATDV 711



 Score = 27.3 bits (59), Expect = 0.004
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 10/109 (9%)

Query: 576 TGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALI---NLPEN 632
           T  +N AE    R     E +Q  L     GYG +    D     R G+ +    N+  N
Sbjct: 764 TPAINSAE----RMAAFAEAEQFILTVCANGYGKISSAYDYRRTGRGGQGITNIDNIARN 819

Query: 633 SEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGK-GNKIINI 680
             V+    +A    D ++ +T+Q +++   +  +  + +   G ++ N+
Sbjct: 820 GLVVGSFPVA--HEDHLMLVTDQAKLIRMGLSSMRVIGRNSAGVRLFNV 866