Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 923 a.a., DNA gyrase, subunit A from Pseudomonas putida KT2440

 Score =  390 bits (1001), Expect = e-112
 Identities = 277/815 (33%), Positives = 418/815 (51%), Gaps = 121/815 (14%)

Query: 22  AYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHP 81
           +YL+Y+M VI+ RALP   DGLKPV RR++YAMSELG   +  YKKSAR VGDV+GKYHP
Sbjct: 20  SYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVVGDVIGKYHP 79

Query: 82  HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLSEL 141
           HGD+A Y+ +V MAQPFS RY LVDGQGN+G+ D   + AAMRYTE +++K A  LL++L
Sbjct: 80  HGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNA-AAMRYTEVRMTKLAHELLADL 138

Query: 142 GQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIHLI 201
            + TVDW PN+DGT Q P ++P R+P++L+NG +GIAVGMAT+IPPHN+ EV D  + LI
Sbjct: 139 HKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLALI 198

Query: 202 DNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAVWCKEGSD----- 256
           DNP   + +LMQ++ GPDFPT A II     + + YR+GRG I MRA    E  D     
Sbjct: 199 DNPEVTIDELMQHIPGPDFPT-AGIINGRQGIIEAYRTGRGRIYMRARSEIEDIDKVGGR 257

Query: 257 --IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDCD 314
             IVIT LP+Q++ A+L+E+IA  ++ KK+  + +LRDESD +   RIVI  R   V  +
Sbjct: 258 QQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDG-MRIVIELRRGEVP-E 315

Query: 315 LLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRETVRSRLQYRLDKV 374
           +++N+L+  T L+  F +N+  + +D RP++  L  +L  ++  RRE V  R  + L K 
Sbjct: 316 VVLNNLYQQTQLQSVFGINVVAL-VDGRPRLLNLKDLLEAFVRHRREVVTRRTVFELRKA 374

Query: 375 LARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMA------------------------ 410
             R HIL+G  +A  N+D VI +I+    P     A                        
Sbjct: 375 RERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMVERAGADSCR 434

Query: 411 -------------RFDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLG 457
                        ++ L+  QA AILD +L  L  LE  K+  E  E+ ++  +L  +L 
Sbjct: 435 PEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGELIRILS 494

Query: 458 SERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWIRH 517
           S  RL  ++++E++A   ++GD RR+ ++    +  L   D++P E   V +S  G   +
Sbjct: 495 SAERLMEVIREELEAIRAEYGDVRRTEIL--NASHDLNYGDMIPEEERVVTISHGG---Y 549

Query: 518 AKGHDVDCQSLNYKAG----------DNYLTH-ACGKSNQQAVFLGSDGRSYSLESHTLP 566
           AK   +       + G          ++Y+ H     S+   +   S G+ Y  +++ +P
Sbjct: 550 AKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYWKKTYEIP 609

Query: 567 ----SARG----------QGEPITGRL----------------------NVAEGTTIRQV 590
               +ARG          +GE IT  L                       V EG  +   
Sbjct: 610 EASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELDEAEDTVLEGELVEAE 669

Query: 591 VMGEED---QLWLVGSDAGYGFVCKGDDLLSKN--------RSGKALINLPENSEVMTPQ 639
            + EED     W+      Y F+      + K         RS   +    +  + +   
Sbjct: 670 EVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDTLIAA 729

Query: 640 VIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLP 699
            I D    E++  ++ G+++ F       + +  G     +   K    + ++S  M++P
Sbjct: 730 AITD-GAKEVMMFSDAGKVIRF----AESVVREMGRNARGVRGMKLGKGQRIIS--MLIP 782

Query: 700 QGASITLYAGKRKLGLKVSDLDNF-RGERGRRGAL 733
           +  S  L A +R  G K + L  F R  RG +G +
Sbjct: 783 ESGSQILTASERGFG-KRTPLSKFPRRGRGGQGVI 816