Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 883 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Kangiella aquimarina DSM 16071

 Score =  404 bits (1037), Expect = e-116
 Identities = 271/769 (35%), Positives = 427/769 (55%), Gaps = 73/769 (9%)

Query: 22  AYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHP 81
           +YL+Y+M VI+ RALP + DGLKPV RR++YAM+ LG   +  YKKSAR VGDV+GKYHP
Sbjct: 20  SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDYNKPYKKSARVVGDVIGKYHP 79

Query: 82  HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLSEL 141
           HGD+A Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE ++ K A  LL++L
Sbjct: 80  HGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD-SAAAMRYTEVRMDKLAHQLLADL 138

Query: 142 GQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIHLI 201
            + TVD++ N+DG+  EP +LP R+P++L+NG +GIAVGMAT+IPPHN+ EV D  + LI
Sbjct: 139 EKETVDFEDNYDGSESEPTVLPTRVPNLLINGSSGIAVGMATNIPPHNLTEVIDGCLALI 198

Query: 202 DNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRA---VWCKEGS--- 255
           DNP+  +++LM+Y+KGPDFPT A II     +   Y +GRG I +RA   V   E S   
Sbjct: 199 DNPDITISELMEYIKGPDFPT-AAIINGRAGIIDAYNTGRGKIYLRARSHVETDEKSGKQ 257

Query: 256 DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDCDL 315
            IV+T LP+QV+ A+L+E+IA  ++ KK+  +  LRDESD +   R+VI  R   V  ++
Sbjct: 258 SIVVTELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDG-MRMVIELRKGEVP-EV 315

Query: 316 LMNHLFASTDLEKSFRVNLNMIGLD-NRPQVKGLVQILSEWISFRRETVRSRLQYRLDKV 374
           ++N+L+A + ++  F   +NM+ LD N+P++  L + +  +++ RRE V  R  + L K 
Sbjct: 316 VLNNLYAQSQMQNVF--GINMVALDNNQPRLFNLKEAIDAFVTHRREVVTRRTIFELRKA 373

Query: 375 LARLHILQGLLIAYLNLDEVIEIIRNEDDPK----------------AVLMAR------- 411
             + H+L+GL IA  N+DEVIE+I+    PK                + ++AR       
Sbjct: 374 REKAHVLEGLAIALANIDEVIELIKQSPTPKEAKEELMNRSWEPGQVSTMLARAGTEACR 433

Query: 412 --------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLG 457
                         + L+D QA AILD +L  L  LE  KI GE  +L    ++L  +L 
Sbjct: 434 PEELAAEFGFHDGYYKLSDAQAQAILDLRLHKLTGLEHDKILGEYKDLLGLIEELLRILM 493

Query: 458 SERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWIRH 517
           S  RL  ++++E++   + FGD RRS ++E +    LT  DL+  E + V LS +G++++
Sbjct: 494 STERLLEVIREELEEVKENFGDARRSEILESK--LDLTIADLITEEDVVVTLSHEGYVKY 551

Query: 518 AKGHDVDCQ-------SLNYKAGDNYLTHACGKSNQQAVF-LGSDGRSYSLESHTLPSA- 568
               +   Q       S      ++++      S    +    S G+ Y L+   LP+A 
Sbjct: 552 QALSEYKAQRRGGRGKSATKMKDEDFIEKLLVASTHDTILCFSSTGKVYWLKVFELPNAG 611

Query: 569 RG-QGEPITGRLNVAEGTTIRQVV---MGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGK 624
           RG +G+PI   L + E   I  ++      ED+   + +  G       +       +G 
Sbjct: 612 RGSRGKPIVNVLPLEENEKINAILPIREFSEDKFVFMATANGTVKKTSLEQFSRPRSNGI 671

Query: 625 ALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAK 684
             + + ++ E+++  V+    +  I+  ++ G+++ F   ++    +  G     +   K
Sbjct: 672 IALTIADDDELIS--VVETDGSSHIMMFSDAGKVIRFDEANV----RPMGRTARGVRGMK 725

Query: 685 AKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERGRRGAL 733
                +V+  ++    G+ +T  A +   G + S  D+    RG +G +
Sbjct: 726 LPEGAKVIQMIVAEENGSVLT--ATENGYGKRTSMEDHPLRGRGGQGVI 772



 Score = 37.4 bits (85), Expect = 3e-06
 Identities = 23/106 (21%), Positives = 55/106 (51%), Gaps = 6/106 (5%)

Query: 579 LNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINL---PENSEV 635
           + + EG  + Q+++ EE+   L  ++ GYG     +D   + R G+ +I++     N  V
Sbjct: 724 MKLPEGAKVIQMIVAEENGSVLTATENGYGKRTSMEDHPLRGRGGQGVISIQMSDRNGAV 783

Query: 636 MTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680
           ++   +  +D DE++ I+  G ++   + D+  + +  +G ++I +
Sbjct: 784 VS--AVPVIDGDEVMLISKGGTLIRTGVDDIRVMGRNTQGVRLIKL 827