Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 875 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Escherichia coli ECRC62

 Score =  388 bits (996), Expect = e-112
 Identities = 264/789 (33%), Positives = 433/789 (54%), Gaps = 77/789 (9%)

Query: 20  EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKY 79
           + +YL+Y+M VI+ RALP + DGLKPV RR++YAM+ LG   +  YKKSAR VGDV+GKY
Sbjct: 18  KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 77

Query: 80  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLS 139
           HPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE +L+K A  L++
Sbjct: 78  HPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEIRLAKIAHELMA 136

Query: 140 ELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIH 199
           +L + TVD+  N+DGT + P ++P ++P++L+NG +GIAVGMAT+IPPHN+ EV +  + 
Sbjct: 137 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 196

Query: 200 LIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRA-----VWCKEG 254
            ID+ +  +  LM+++ GPDFPT A II     +E+ YR+GRG + +RA     V  K G
Sbjct: 197 YIDDEDISIEGLMEHIPGPDFPT-AAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTG 255

Query: 255 SD-IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDC 313
            + I++  +P+QV+ A+L+E+IA  ++ K++  +  LRDESD +   RIVI  + + V  
Sbjct: 256 RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG-MRIVIEVKRDAVG- 313

Query: 314 DLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRETVRSRLQYRLD 372
           ++++N+L++ T L+ SF   +NM+ L + +P++  L  I++ ++  RRE V  R  + L 
Sbjct: 314 EVVLNNLYSQTQLQVSF--GINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELR 371

Query: 373 KVLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR------------------ 411
           K   R HIL+ L +A  N+D +IE+IR+   P   K  L+A                   
Sbjct: 372 KARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDA 431

Query: 412 ----------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEEL 455
                           + LT+ QA AILD +L+ L  LE  K+  E  EL  +  +L  +
Sbjct: 432 ARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRI 491

Query: 456 LGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWI 515
           LGS  RL  ++++E++   ++FGD RR+ +     +  +   DL+  E + V LS +G++
Sbjct: 492 LGSADRLMEVIREELELVREQFGDKRRTEIT--ANSADINLEDLITQEDVVVTLSHQGYV 549

Query: 516 RHAKGHDVDCQ--------SLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPS 567
           ++    + + Q        +   K  D         ++   +   S GR YS++ + LP 
Sbjct: 550 KYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE 609

Query: 568 A-RG-QGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNR---S 622
           A RG +G PI   L + +   I  ++   E +  +    A      K   L   NR   +
Sbjct: 610 ATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTA 669

Query: 623 GKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPA 682
           GK  I L +  E++   + +    DE++  + +G+++ F    +    +  G     +  
Sbjct: 670 GKVAIKLVDGDELIGVDLTS--GEDEVMLFSAEGKVVRFKESSV----RAMGCNTTGVRG 723

Query: 683 AKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERGRRGALLPRGLQR-- 740
            +    ++V+S  +++P+G    L A +   G + +  +     R  +G +  +  +R  
Sbjct: 724 IRLGEGDKVVS--LIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 781

Query: 741 --VTAIEIE 747
             V A++++
Sbjct: 782 LVVGAVQVD 790