Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 877 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Dickeya dianthicola ME23

 Score =  393 bits (1009), Expect = e-113
 Identities = 272/791 (34%), Positives = 429/791 (54%), Gaps = 77/791 (9%)

Query: 20  EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKY 79
           + +YL+Y+M VI+ RALP + DGLKPV RR++YAMS LG   +  YKKSAR VGDV+GKY
Sbjct: 18  KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSARVVGDVIGKY 77

Query: 80  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLS 139
           HPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE ++SK A  LLS
Sbjct: 78  HPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEVRMSKIAHELLS 136

Query: 140 ELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIH 199
           +L + TVD+ PN+DGT Q P ++P R+P++L+NG +GIAVGMAT+IPPHN+ EV +  + 
Sbjct: 137 DLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSEVINGCLA 196

Query: 200 LIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRA-----VWCKEG 254
            ID+ N  +  LM ++ GPDFPT A II     +E+ YR+GRG + +RA        K G
Sbjct: 197 YIDDENISVEGLMTHIPGPDFPT-AAIINGKRGIEEAYRTGRGKVYIRARAEVEADAKSG 255

Query: 255 SD-IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDC 313
            + I++  +P+QV+ A+L+E+IA  ++ K++  +  LRDESD +   RIVI  + + V  
Sbjct: 256 RETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDG-MRIVIEIKRDAVG- 313

Query: 314 DLLMNHLFASTDLEKSFRVNLNMIGL-DNRPQVKGLVQILSEWISFRRETVRSRLQYRLD 372
           ++++NHL++ T ++ SF   +NM+ L   +P+V  L +IL+ ++  RRE V  R  + L 
Sbjct: 314 EVVLNHLYSQTQMQVSF--GINMVALHQGQPKVMTLKEILAAFVRHRREVVTRRTIFELR 371

Query: 373 KVLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMA------------------- 410
           K   R HIL+GL IA +N+D +IE+IR+   P   KA L+A                   
Sbjct: 372 KARERAHILEGLAIALVNIDPIIELIRHASTPADAKAALVAQAWELGSVASMLERAGDDA 431

Query: 411 ---------------RFDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEEL 455
                          R+ LT+ QA AILD +L+ L  LE  K+  E  EL  +  +L  +
Sbjct: 432 ARPEWLEPEFGIHDDRYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLGQIAELLFI 491

Query: 456 LGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWI 515
           L    RL  ++++E+ A  +++ D RR+ +     +  +   DL+  E + V LS +G++
Sbjct: 492 LRRPERLMEVIREELLAIREQYNDVRRTEIT--HNSADINIEDLISEENVVVTLSHQGYV 549

Query: 516 RHAKGHDVDCQ--------SLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPS 567
           ++    D + Q        +   K  D         ++   +   S GR Y L+ + LP 
Sbjct: 550 KYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVYQLPE 609

Query: 568 A-RG-QGEPITGRLNVAEG---TTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRS 622
           A RG +G PI   L +      T I  V   EE     + + +G        +      +
Sbjct: 610 ASRGARGRPIINLLPLEPDERITAILPVREYEEGMNVFMATASGTVKKTALTEFSRPRSA 669

Query: 623 GKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPA 682
           G   +NL E  E++   +     ++E++  + +G+++ F         +  G     +  
Sbjct: 670 GIIAVNLNEGDELIGVDLTD--GSNEVMLFSAEGKVVRFS----ESAVRTMGRTATGVRG 723

Query: 683 AKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERGRRGALLPRGLQR-- 740
              +  + V+S  +++P+G    L   +   G + +  +     R  +G +  +  +R  
Sbjct: 724 INLQNDDRVVS--LIVPRGEGDILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERNG 781

Query: 741 --VTAIEIETS 749
             V A++++T+
Sbjct: 782 KVVGAVQVDTA 792