Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 842 a.a., DNA gyrase, A subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  399 bits (1024), Expect = e-115
 Identities = 233/599 (38%), Positives = 363/599 (60%), Gaps = 29/599 (4%)

Query: 22  AYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHP 81
           AY++YSM VI+ RALP + DG+KPV RRI++ M ELG+  +  YKKSAR VG+VLGKYHP
Sbjct: 21  AYIDYSMSVIVSRALPDVRDGMKPVHRRILFGMQELGVLHNKPYKKSARIVGEVLGKYHP 80

Query: 82  HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLSEL 141
           HGDSA YE MV MAQ +S RYPLVD QGN+G+ D   + AAMRYTEA+L + AE LL+++
Sbjct: 81  HGDSAVYETMVRMAQDWSLRYPLVDPQGNFGSIDGDNA-AAMRYTEARLKRIAEELLTDI 139

Query: 142 GQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIHLI 201
            + TVD+Q NFD +++EP +LPA++P +LLNG +GIAVGMAT++ PH + EV D TI  I
Sbjct: 140 NKETVDFQLNFDDSLKEPVVLPAKIPALLLNGASGIAVGMATNMAPHQLGEVIDGTIAYI 199

Query: 202 DNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAVWCKEGSD----- 256
           +N +  + +LM++V  PDFPT   II     ++  Y +GRG + MR     E  D     
Sbjct: 200 ENNDITVEELMKHVIAPDFPT-GGIIYGYNGVKSAYETGRGRVVMRGKATIETKDTGKEM 258

Query: 257 IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDCDLL 316
           I+I  +P+ V+ A ++E+ A  ++ KKL  +  +RDESD     RIV   + + +  +++
Sbjct: 259 IIINEIPYLVNKANMIEKTAQLIQEKKLEGISAIRDESDRRG-MRIVYELKRDAI-ANVV 316

Query: 317 MNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRETVRSRLQYRLDKVLA 376
           +N+L+  T L+ SF +N N+  +  RP    L +++  +++ R E V  R +Y L +   
Sbjct: 317 LNNLYKQTQLQTSFSIN-NVALVKGRPYTLNLKELIVHYVNHRHEVVTRRTEYELREAEK 375

Query: 377 RLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMARFDLTDIQADAILDTKLRHLAKL 433
           R HILQG LIA  NLDEVI +IRN  DP+     LM +F+LT+IQA AILD +L+ L  +
Sbjct: 376 RAHILQGYLIALDNLDEVISLIRNSRDPETARTGLMEKFELTEIQARAILDMRLQRLTGM 435

Query: 434 EEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKA 493
           E  KI+ E +EL    + L+++L  + R   ++K E+    +++ D+RR+ +     A+ 
Sbjct: 436 EREKIQKEYEELMLLIEDLKDILEKKERRMEIIKTELSEIKERYNDERRTTI--EHNAED 493

Query: 494 LTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLN-------YKAGDNYLTHACGKSNQ 546
            +  D++P+E + + +S +G+++     +   Q              D+Y  +    S  
Sbjct: 494 FSYEDMIPNEEVIITVSHQGYVKRTALKEYRTQGRGGVGSRGVSTKDDDYTEYLFSASTH 553

Query: 547 QAVFLGSD-GRSYSLESHTLP--SARGQGEPITGRLNVAEGTTIRQVV----MGEEDQL 598
             + + +D G+ + L+++ +P  S   +G PI   +N+     IR ++    + +ED +
Sbjct: 554 NYLLIFTDKGKLFWLKTYAIPEGSKTSKGRPIQNLINIESDDKIRSIIQVTDLNDEDYI 612



 Score = 33.1 bits (74), Expect = 6e-05
 Identities = 32/161 (19%), Positives = 68/161 (42%), Gaps = 11/161 (6%)

Query: 527 SLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITG----RLNVA 582
           +LN +  D  L       +   +     GR+       +   R  G   TG     L+  
Sbjct: 644 ALNIREDDQLLNVEFTHGDSHILIAAKSGRAIHFHESAV---RPMGRTATGVKAITLSDD 700

Query: 583 EGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKAL--INLPENSEVMTPQV 640
           +   +  V +  E+   LV S+ GYG     ++    NR GK +  +N+ + +  +   +
Sbjct: 701 KDEVVGMVCVNREEATLLVVSEKGYGKRSAVEEYRITNRGGKGVKAMNVTDKTGSLV-AI 759

Query: 641 IADLDNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680
            + +D+D+++ I   G ++  P+  L  + +  +G ++I +
Sbjct: 760 KSVIDSDDLMIINKSGIIIRTPVSGLRIMGRATQGVRLIKL 800