Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., type II secretion system inner membrane protein GspF from Rhodanobacter sp000427505 FW510-R12

 Score =  213 bits (541), Expect = 1e-59
 Identities = 132/408 (32%), Positives = 215/408 (52%), Gaps = 17/408 (4%)

Query: 9   LKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQ-HIQIKKLKK---GSVSLLARLTHR 64
           +  YR+K +N +G+ + G+M A S  EV  +L+DQ H  ++       G  S LA L  R
Sbjct: 1   MSQYRYKAVNESGEVLQGRMEAASVEEVIGRLQDQGHTPLEAQPADGAGGGSGLAALFRR 60

Query: 65  --VKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSK 122
                  +   T QLAT+L  G P+ +AL ++ +       K ++ ++   V  G  LS 
Sbjct: 61  GPFSGDQLAQFTHQLATLLGAGQPLDRALGILLELPEGESAKKLVERVRDRVRGGNSLSS 120

Query: 123 AMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLV 182
           A+      F  LYV LV  GE  G+L E   RLA Y E+++QLR  ++ ALIYP+ +++ 
Sbjct: 121 ALDEEHGVFPKLYVSLVRAGEAGGSLEETLRRLADYLERAQQLRGSIVNALIYPAFLLVG 180

Query: 183 ALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLK 242
            LG   L+L  V+P+F  +F+     +PW T  VL L + +QA   W ++ +     GL 
Sbjct: 181 VLGSLVLLLAYVVPQFVPIFEDMQVPVPWITAAVLALGNALQA---WWWLIVLLLGGGLA 237

Query: 243 ALRKNSFQIRLKTSRLG-----LKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKT 297
           A R    ++R   +RL      L+  ++G +L K   A+ +RTL T    G+P+L++L  
Sbjct: 238 AWRA---RLREPAARLAWHARLLRLRVVGPLLLKVETARIARTLGTLLKNGVPLLSALTI 294

Query: 298 TAKTSGNVHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNK 357
             + +GN   + A++  +     G  + +A+  ++ FP + +QMV +GEE+GQLD ML K
Sbjct: 295 ARQVTGNRALDAALDAAHEQVKGGAGLSLALGQSKLFPRLAMQMVQVGEEAGQLDTMLLK 354

Query: 358 VATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMS 405
           VA  +E E    +D L   L P + + +  +V  ++ A+ LP+ +L S
Sbjct: 355 VADTFELESRRAIDRLLAALVPALTIVMTVLVAIIMAAILLPLLSLTS 402



 Score = 33.9 bits (76), Expect = 9e-06
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 21/136 (15%)

Query: 274 IAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRNTEA 333
           +A+F+  LAT   AG P+  +L    +       +  +  V      G  +  A+     
Sbjct: 68  LAQFTHQLATLLGAGQPLDRALGILLELPEGESAKKLVERVRDRVRGGNSLSSALDEEHG 127

Query: 334 -FPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGL 392
            FP++ + +V  GE  G L++ L ++A   E                        + G +
Sbjct: 128 VFPKLYVSLVRAGEAGGSLEETLRRLADYLERAQQ--------------------LRGSI 167

Query: 393 VVAMYLPIFNLMSVLG 408
           V A+  P F L+ VLG
Sbjct: 168 VNALIYPAFLLVGVLG 183