Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., Type IV fimbrial assembly protein PilC from Variovorax sp. SCN45

 Score =  305 bits (781), Expect = 2e-87
 Identities = 163/396 (41%), Positives = 244/396 (61%), Gaps = 4/396 (1%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDIT 71
           + W+G + NGK V G++ A  E +V+  L+ Q +   K+KK  +    R   ++K KDI 
Sbjct: 18  FEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRM----RSGKKIKPKDIA 73

Query: 72  ILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHF 131
           I TRQLATM+  GVP++Q+  +VG  +  A +  +L  I   VE GT LS A R    +F
Sbjct: 74  IFTRQLATMMKAGVPLMQSFDIVGRGNANASVAKLLNDIRSDVETGTSLSMAFRKFPKYF 133

Query: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191
           D LY +LVE GE +G L E+ +RLATY EK+E +++K+  AL+YP+ V++VA  V  +++
Sbjct: 134 DNLYCNLVEAGEAAGILEELLDRLATYMEKTEAIKSKIKSALMYPTSVIVVAFVVVAIIM 193

Query: 192 TMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKALRKNSFQI 251
             VIP F+ +F  FGA+LP  T  V+ +S +  +Y    F  +   I+      K + ++
Sbjct: 194 IFVIPAFKQVFTSFGADLPAPTLFVMAISEFFVSYWWLIFGGLGGGIYFFLQAWKRNERV 253

Query: 252 RLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAI 311
           +    R  L+ PI G ++ K+ +A+++RTLAT FAAGIP++ +L +    SGN  +  A 
Sbjct: 254 QRVMDRALLRVPIFGVLIEKSCVARWTRTLATMFAAGIPLVEALDSVGGASGNTVYGDAT 313

Query: 312 NEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVD 371
            ++ ++ + G  +  AM N   FP MV+QM  IGEESG +D ML K A  YE EVD+ V 
Sbjct: 314 AKIQQEVSTGTSLTAAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVA 373

Query: 372 NLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVL 407
            L  ++EP+IIVFLGT++GG+VV+MYLPIF L  V+
Sbjct: 374 GLSSLMEPIIIVFLGTIIGGIVVSMYLPIFKLGQVV 409