Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

 Score =  187 bits (474), Expect = 6e-52
 Identities = 114/405 (28%), Positives = 211/405 (52%), Gaps = 14/405 (3%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHI--------QIKKLKKGSVSLLARLTH 63
           + +K +++ G+   G +   +  +VR +LK+Q +        Q+K  +  S     +   
Sbjct: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK--R 61

Query: 64  RVKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKA 123
            + + D+ ++TRQLAT++ +G+P+ + L+ V +   K  ++++L  +   V  G  LS +
Sbjct: 62  GISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDS 121

Query: 124 MRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVA 183
           +      FD L+  +V  GE SG+L  V ERLA Y E  +++R+K+ +A+IYP ++V+ A
Sbjct: 122 LGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181

Query: 184 LGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKA 243
           +G+   +L  V+P+    F   G  LP  TQ +L  S ++Q + +   + +   I+ ++ 
Sbjct: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVRW 241

Query: 244 LRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSG 303
           L      IRL+  R  +  P+IG +    + A+F+RTL+   ++ IPIL  ++       
Sbjct: 242 LLTKP-DIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMT 300

Query: 304 NVHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYE 363
           N   +  +     +   G  +  A+  T+ FP M+L M+  GE+SG+L+ ML + A   +
Sbjct: 301 NQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQD 360

Query: 364 FEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIF---NLMS 405
              ++TV+    I  P +I  +  +V  +V+A  +PI    NLMS
Sbjct: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405