Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., Type II secretion pathway protein XcpS from Pseudomonas putida KT2440

 Score =  184 bits (467), Expect = 4e-51
 Identities = 107/394 (27%), Positives = 206/394 (52%), Gaps = 3/394 (0%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDIT 71
           Y  K +   G  V  Q+ A    + R + +DQ +++  L+    +L      R  + D+ 
Sbjct: 10  YSLKALGRQGV-VQLQIDAEDADQARRQAEDQGLRVLSLRSSGGALRGMAWRREAAFDLV 68

Query: 72  ILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHF 131
           + +++L+T+L  G+P++ AL+ + +    A  + +LA++ + +  G  LS+A+      F
Sbjct: 69  LFSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQLYEGRSLSQALGQQPRVF 128

Query: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191
             LYV LV++ E +G L +   R  +YR++ + +R K++ A +YP +++LV  GV   +L
Sbjct: 129 PPLYVALVQSSERTGALGDALTRYISYRQRLDLVRQKLVGASVYPLLLLLVGGGVVLFLL 188

Query: 192 TMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKALRKNSFQI 251
             V+P F  +F+G G ELPW ++ ++++  ++ A      +     +  L  LR++  ++
Sbjct: 189 GYVVPRFSQVFEGMGTELPWLSRVLMQVGLFLHAQQAPLALGTVGGVAALWLLRRHP-RV 247

Query: 252 RLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAI 311
           R   S    + P +   L    +A+F R+L      GIPIL ++       GN   +  +
Sbjct: 248 RYWASCQLRRLPALHQRLMMYELARFYRSLGILLQGGIPILTAMGMARGLLGNAAAQ-GL 306

Query: 312 NEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVD 371
            +  +    G+P+  A+        + L+++  GE+SG L +ML + A  ++ E+   V+
Sbjct: 307 EQASQRVGEGLPLSDALAAGHLVTPVSLRLLRAGEQSGNLGEMLERCADFHDQEIGRWVE 366

Query: 372 NLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMS 405
              K+ EPL++ F+G ++G +V+ MY+PIF L S
Sbjct: 367 WFVKLFEPLLMTFIGLLIGLIVILMYMPIFELAS 400