Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Type 4 fimbrial assembly protein PilC from Pseudomonas putida KT2440

 Score =  270 bits (690), Expect = 6e-77
 Identities = 159/396 (40%), Positives = 230/396 (58%), Gaps = 1/396 (0%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDIT 71
           Y W G ++NG  VSGQ    S   VR  L  Q I +  L+  S  L   L  R +  D  
Sbjct: 8   YHWHGTDANGAPVSGQTPGRSPAYVRAGLIRQGITVASLRPAS-GLAFSLPKRREKADPA 66

Query: 72  ILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHF 131
             +RQLAT+L  GVP++QA +++G +   A   ++L ++ + V +G  L+ A++   A F
Sbjct: 67  GFSRQLATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQDVASGLGLADALQRHPAWF 126

Query: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191
           D LY +LV  GE SG L    E+LA   E+   L  KV KA+IYP +++L  LGVS ++L
Sbjct: 127 DALYCNLVRVGEQSGTLDRQLEQLAGMLEQRRVLHKKVRKAMIYPLLLLLTGLGVSAILL 186

Query: 192 TMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKALRKNSFQI 251
             VIP+FESMF G GA LP FTQ V+ LS  +  ++    +        ++ L +     
Sbjct: 187 LEVIPKFESMFSGMGAALPAFTQWVINLSTGLSRFAPLLLVMGVVMGVAVRQLYRQHAPA 246

Query: 252 RLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAI 311
           RL  SR  L  P+ G +L +A++A+F+R+LATS+ AG+P+L +L T A+ +G    E A+
Sbjct: 247 RLWISRRVLGLPVFGKLLGQAALARFARSLATSYGAGVPLLDALGTVARVTGGDLHEQAV 306

Query: 312 NEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVD 371
             + +  A G  +  AM     FP +++Q+  IGE SG LD ML K A+ YE +V   +D
Sbjct: 307 LRLRQGMANGQGLNQAMAGEPLFPPLLVQLTAIGESSGTLDQMLEKAASHYEEQVSQALD 366

Query: 372 NLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVL 407
            L  +LEP I++ LG +VGGLVVAMYLPIF L S++
Sbjct: 367 QLTSLLEPAIVLILGLLVGGLVVAMYLPIFQLGSLI 402