Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Type II secretion system protein F from Pseudomonas lactucae CFBP13502

 Score =  123 bits (309), Expect = 8e-33
 Identities = 87/377 (23%), Positives = 177/377 (46%), Gaps = 6/377 (1%)

Query: 27  QMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDITILTRQLATMLTTGVP 86
           ++ A+   + R +L+    ++  LK        RL  R     + +  ++L  +L  G+ 
Sbjct: 18  RLQALDLAQARQQLQADGARVVALKARRA---LRLPRRRSPFALGLFIQELVVLLDAGLV 74

Query: 87  IVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHFDTLYVDLVETGEMSG 146
           +V+A++ + D       + +++ +  S+  G  LS+AM+     F  L V  V + E SG
Sbjct: 75  LVEAVETLRDKAPPGVNRQVMSDLLASMYEGNSLSRAMQLKPQVFPALLVATVASSEHSG 134

Query: 147 NLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFG 206
            L     R   +    + ++ +V  AL+YP +V+ V   +   +L  VIP F S+F    
Sbjct: 135 QLAVALRRYHHFEAHLQTVKKRVSGALMYPLVVLSVGALILLFLLFFVIPRFASVFDAV- 193

Query: 207 AELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKALRKNSFQIRLKTSRLGLKFPIIG 266
            +LP   + ++     VQA  +   + +  AI G   L   S   + + + L  K P +G
Sbjct: 194 TDLPATARFMVWWGALVQARGMELLLGLLLAI-GALVLLFRSTAFKRRAAGLFWKIPSLG 252

Query: 267 NVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAAGMPMYI 326
                  +A+F RT       G+P++ +L+ +         +  +     D  AG P+ +
Sbjct: 253 AQRTLFILARFYRTAGMLLMGGMPVVMALQLSGALLPPER-QADLRHAMTDIQAGQPLSM 311

Query: 327 AMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLG 386
           ++   +    +  +++ +GE+SG+L  M  ++A  ++  ++  ++   K+ EPL+++ +G
Sbjct: 312 SLARHQLTTAVAERLLRVGEQSGELAAMCERIAQFHDEALERAIELFSKVFEPLLMLVVG 371

Query: 387 TVVGGLVVAMYLPIFNL 403
            ++G +V  +Y+PIF L
Sbjct: 372 GLIGLIVFMLYMPIFEL 388