Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., Type IV fimbrial assembly protein PilC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  214 bits (544), Expect = 5e-60
 Identities = 123/393 (31%), Positives = 221/393 (56%), Gaps = 8/393 (2%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDIT 71
           +RW+G+N  G+     + A + + +   L+ Q I   ++K+  V+  A L    +S +I 
Sbjct: 7   WRWQGVNDKGQLEQDVVWADNRLALIITLQHQRIMPLRIKRMGVN--AALWKEEQSAEII 64

Query: 72  ILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHF 131
               QLAT++  G+ + + L+L+   H   + +++L  +   +E G P S A+ +    F
Sbjct: 65  ---HQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVSWPQVF 121

Query: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191
             LY  ++ TGE++G L E    LA  ++   Q+   V KAL YP++++ +A  V + ML
Sbjct: 122 PPLYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPAIILTMAALVVFAML 181

Query: 192 TMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYS-LWAFIAIAAAIFGLKALRKNSFQ 250
             V+PEF ++++ F   LP  T+ ++ ++ W  A+  L  F+ +  AI   +  +K S+Q
Sbjct: 182 HFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLILFLTMLVAIAHRRVKQKPSWQ 241

Query: 251 IRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETA 310
            + +  RL L+ P++G ++    +A+    LA + +AGIP L  L++   + G  ++   
Sbjct: 242 AQRQ--RLLLRLPVMGRLIRGQKLAQIFTVLALTQSAGIPFLQGLESAIDSLGCPYWSQR 299

Query: 311 INEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTV 370
           + +V+++ AAG P+++A++NT+ F  + LQ+V  GE SG LD ML+ +A  +        
Sbjct: 300 LTQVHQEIAAGNPVWLALKNTQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSETTLALA 359

Query: 371 DNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNL 403
           DNL  +LEP +++  G ++G LVVAMYLPIF+L
Sbjct: 360 DNLASLLEPALLIITGLIIGTLVVAMYLPIFHL 392