Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., protein transport protein HofC from Erwinia tracheiphila SCR3

 Score =  218 bits (554), Expect = 3e-61
 Identities = 136/407 (33%), Positives = 220/407 (54%), Gaps = 18/407 (4%)

Query: 9   LKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKS- 67
           L+ + W+ I + G++++G        E  D L   ++   KL  G          R +S 
Sbjct: 4   LRLFNWQAIGNEGQRLNGAFFCQHRQEAMDNLLALNLISLKLTSG---------RRYRSI 54

Query: 68  ----KDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKA 123
               +D     RQLAT+L  G+ +  AL+L  + H  A  +++LA +   +  G P S A
Sbjct: 55  DWQWQDKINFFRQLATLLKAGMSLSDALQLTCEGHSNAGWQALLAHLQHRISNGVPFSDA 114

Query: 124 MRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVA 183
           +      F  L+  L++ GE++G + E   +LA  +E+  QL+ KV KAL YP +V+ +A
Sbjct: 115 LTEWPIIFPPLFPALIQIGELTGRMDECCLQLADQQERQHQLQKKVTKALRYPLIVLAIA 174

Query: 184 LGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYS--LWAFIAIAAAIFGL 241
           L VS  ML  V+PEF ++++ F A LP FT  V+ LS  +Q Y      F+ I    +  
Sbjct: 175 LLVSLGMLLFVLPEFVAIYQAFDAPLPGFTAAVIALSEAIQHYGPLFLPFLFIIYLSWRW 234

Query: 242 KALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKT 301
           +  R  ++Q R +  ++ LK P+ G+++    +++   TLA +  AG+ +L SL+   KT
Sbjct: 235 QNRRSPNWQRRQQ--QILLKLPLAGDLIRGGQLSRIFMTLALTQHAGLTLLDSLQALEKT 292

Query: 302 SGNVHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATI 361
                +   +  + +  +AG P+Y AM+N   F  +  Q+V +GEESG LD ML+++A  
Sbjct: 293 LSQRLWRETVAALQQHISAGNPLYKAMKNHTLFTPLCYQLVKVGEESGSLDSMLSRLAER 352

Query: 362 YEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVLG 408
           YE   +   DNL + LEP++++ +G +V  LVVAMYLP+FNL S LG
Sbjct: 353 YETSTNELADNLAEALEPVMMIVIGLIVATLVVAMYLPVFNLGSALG 399