Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., type II secretion system protein F from Enterobacter asburiae PDN3

 Score =  169 bits (427), Expect = 2e-46
 Identities = 113/406 (27%), Positives = 204/406 (50%), Gaps = 16/406 (3%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQH---IQIKKLKKGSVSLLARLTHRVKSK 68
           Y W   ++ GK   G + A    +VR  L++Q    + I      S    AR   ++   
Sbjct: 4   YAWSATDAAGKTQRGTLQAEGPKQVRQMLREQKLMPVNIAPTSDPSAGKNARKGAKLSIP 63

Query: 69  DITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTAS 128
            +++ TRQLAT++   +P+  ALK +        + +++++I   +  G  L  A     
Sbjct: 64  VLSMFTRQLATLVNAALPLESALKAIAKQTEDKTLAAMVSEIRDKIVEGHTLFDAFSQFP 123

Query: 129 AHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSY 188
             FD LY  LV  GE +G+L  V E+LA Y E+ +++++K+ +A++YP  + +VA+ V  
Sbjct: 124 RSFDKLYCTLVMAGEKTGHLGGVLEKLAEYNEQRQKMKSKLTQAMVYPITLTVVAIAVIS 183

Query: 189 LMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKALRKNS 248
           ++L  V+P+    F     ELP  T+ ++ +S ++QA+     I IA  +FG  A  K  
Sbjct: 184 ILLVAVVPQVIDQFTHMKQELPVTTRTLIAVSDFLQAWG----IVIAGGLFGASASFK-- 237

Query: 249 FQIRLKTSR------LGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTS 302
           F I+++ +R      L LK P+   V A  S A++ RTL+   A+ +P+L  +       
Sbjct: 238 FWIKVEKNRFVYHRWLLLKSPLKKLVCAINS-ARYIRTLSILQASSVPLLEGMYIAMDGI 296

Query: 303 GNVHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIY 362
            N++    + +       G  +Y A+     FP  +L MV  GEESG+L  ++++ A   
Sbjct: 297 ENLYARQVLEQAADTVRQGASLYNALEQARIFPPTMLYMVASGEESGELGSLMDRAAENQ 356

Query: 363 EFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVLG 408
           E  + + +     + EP ++V + TVV  +V+++  P+  L +++G
Sbjct: 357 ESALQHRITLTLSVFEPALVVTMATVVLFIVLSILQPLLQLNNMVG 402