Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., type II secretion system inner membrane protein GspF from Dickeya dianthicola ME23

 Score =  197 bits (502), Expect = 4e-55
 Identities = 114/404 (28%), Positives = 214/404 (52%), Gaps = 9/404 (2%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLK--------KGSVSLLARLTH 63
           ++++ +N+ GKK  G   A S    R  L+++ +   K++        +   SL  R +H
Sbjct: 4   FQYQALNAQGKKSQGMQEADSARHARQLLREKGLVPVKIEEQRGEVTSRSGFSLSLRRSH 63

Query: 64  RVKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKA 123
           R+ + D+ +LTRQLAT++   +P+ +AL  V     K ++ +++A +   V  G  L++A
Sbjct: 64  RISASDLALLTRQLATLVAAALPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHSLAEA 123

Query: 124 MRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVA 183
           M      F+ LY  +V  GE SG+L  V  RLA Y E+ +Q+R+++ +A+IYP ++ LVA
Sbjct: 124 MGNFPGSFERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTLVA 183

Query: 184 LGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKA 243
           + V  ++L+ V+P+    F      LP  T+ ++ +S  V++Y  W  + +  A+ G + 
Sbjct: 184 ISVVSILLSAVVPKVVEQFIHMKQALPLSTRLLMGVSDAVRSYGPWVVVLLVLAVMGFRV 243

Query: 244 LRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSG 303
           L +   + RL   R  L  P+IG +    + A+++RTL+   ++ +P+L +++ +     
Sbjct: 244 LLRQE-KHRLVFHRRLLFLPLIGRIARGLNTARYARTLSILNSSAVPLLQAMRISGDVLT 302

Query: 304 NVHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYE 363
           N +    + +       G+ +  A+  T  FP M+  M+  GE SG+LD ML + A   +
Sbjct: 303 NDYARFRLGQATDAVREGVSLNKALEQTSLFPPMMRHMIASGERSGELDGMLTRAADNQD 362

Query: 364 FEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVL 407
            E    +     + EPL++V +  +V  +V+A+  PI  L +++
Sbjct: 363 REFSAQMTLALGLFEPLLVVSMAGIVLFIVLAILQPILQLNTLM 406