Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., general secretory pathway component, cryptic from Escherichia coli BL21

 Score =  196 bits (498), Expect = 1e-54
 Identities = 117/399 (29%), Positives = 217/399 (54%), Gaps = 5/399 (1%)

Query: 11  NYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDI 70
           NYR++ +  +G+K+ G + A  E + R +L+++ + +  ++    S +     R+   ++
Sbjct: 2   NYRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQKSSGVKTRRPRISHSEL 61

Query: 71  TILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAH 130
           T+ TRQLAT+    +P+ ++L ++G       +  +L Q+  ++  G PLS A++     
Sbjct: 62  TLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEGHPLSDALQHFPTL 121

Query: 131 FDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLM 190
           FD+LY  LV+ GE SG L  V E+LA Y E  +++R+K+I++LIYP M+  VA+GV  ++
Sbjct: 122 FDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYPCMLTTVAIGVVIIL 181

Query: 191 LTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQ--AYSLWAFIAIAAAIFGLKALRKNS 248
           LT V+P+    F     +LP  T+ +L LS  +Q    +L A + I A  F L   R N+
Sbjct: 182 LTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFIVAVGFWLWLKRGNN 241

Query: 249 FQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFE 308
              R +   + L+  +IG ++   + A++ RTL+   ++G+P+L  +  + ++  N+   
Sbjct: 242 ---RHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNLEIR 298

Query: 309 TAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDN 368
             +     +   G  +++++  T  FP M+L MV  GE+SGQL  ++ + A   E    N
Sbjct: 299 QRLANAAENVRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETLQQN 358

Query: 369 TVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVL 407
            +     I EP +I+ +  +V  +VV++  P+  L S++
Sbjct: 359 RIALTLSIFEPALIITMALIVLFIVVSVLQPLLQLNSMI 397