Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., putative type II secretion protein GspF from Escherichia coli BL21

 Score =  195 bits (495), Expect = 2e-54
 Identities = 119/406 (29%), Positives = 216/406 (53%), Gaps = 12/406 (2%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQ-----HIQIKKLKKGSVSLLARLTH--- 63
           + ++ +  NG+K  G + A S    R  L+ +     HI+ + +   +  +L R  H   
Sbjct: 4   FYYQALERNGRKTKGMIEADSARHARQLLRGKDLIPVHIEAR-MNASAGGMLQRRRHAHR 62

Query: 64  RVKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKA 123
           RV + D+ + TRQLAT++   +P+   L+ V +   K  +KS+   +   ++ G  LS +
Sbjct: 63  RVAAADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDS 122

Query: 124 MRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVA 183
           +R     FD+L+  +V  GE SG+L  V  RLA Y E+ ++L++++++A++YP ++++VA
Sbjct: 123 LREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLVVA 182

Query: 184 LGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSL-WAFIAIAAAIFGLK 242
            GV  ++LT V+P+    F   G  LP  T+ ++ +S  +QA  + W    +   + G +
Sbjct: 183 TGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYWLAGLLGLLVLGQR 242

Query: 243 ALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTS 302
            L+  +  +RL+  +  L+ P+ G V    + A+FSRTL+   A+ +P+L  ++T A  S
Sbjct: 243 LLKNPA--MRLRWDKTLLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAVS 300

Query: 303 GNVHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIY 362
            N + E  +         G  +  A+     FP M+L M+  GE+SG+L+ ML + A   
Sbjct: 301 ANRYVEQQLLLAADRVREGSSLRAALAELRLFPPMMLYMIASGEQSGELETMLEQAAVNQ 360

Query: 363 EFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVLG 408
           E E D  V     + EP ++V +  VV  +V+A+  P+  L +++G
Sbjct: 361 EREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPMLQLNNMVG 406