Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., General secretion pathway protein F from Alteromonas macleodii MIT1002

 Score =  363 bits (932), Expect = e-105
 Identities = 184/396 (46%), Positives = 271/396 (68%), Gaps = 1/396 (0%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDIT 71
           + W+G +  G    G++ A S  E ++ L+ Q I   ++KK S SL  R   ++   DI+
Sbjct: 7   FEWQGKDRQGLSRKGEISAASLSEAKNLLRRQGISANRVKKPSKSLFRR-EKKITPADIS 65

Query: 72  ILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHF 131
           +++RQ+ATML  GV ++Q+L+++   H  + M+ +L +IT  V+AG PLS A+R    +F
Sbjct: 66  VISRQIATMLAAGVTLIQSLEMISQGHANSSMRKLLGEITDEVKAGNPLSSALRKHPLYF 125

Query: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191
           D LY DLV TGE SG L  +++R+ATY+EK+E L++K+ KA+ YP  V++VA  V+ ++L
Sbjct: 126 DDLYCDLVYTGEQSGALETIYDRIATYKEKAEALKSKIKKAMFYPIAVLVVAFIVTTILL 185

Query: 192 TMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKALRKNSFQI 251
             V+P+FE +F  FGAELP FTQ VL +S +VQ Y ++  I I  A F      K S ++
Sbjct: 186 IFVVPQFEEIFSSFGAELPAFTQFVLAISRFVQDYGIFIAIGIGGAGFMFMRTYKRSQKL 245

Query: 252 RLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAI 311
           R    R  LK P+IG +L KASIA+F+RTLAT+FAAG+P++ +L++ A  SGN  +  AI
Sbjct: 246 RDTVDRNILKIPVIGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNAVYRDAI 305

Query: 312 NEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVD 371
             + ++ A GMPM++AMR T+ FP+MV QM+ IGEESG +D+ML+K+ATIYE EVD+ VD
Sbjct: 306 LYMRKEVAGGMPMHVAMRATQVFPDMVTQMIAIGEESGAVDEMLSKIATIYEAEVDDMVD 365

Query: 372 NLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVL 407
            L  +LEP+I+  LG V+GGL+VAMYLPIF + +V+
Sbjct: 366 GLTSLLEPMIMAVLGVVIGGLIVAMYLPIFQMGNVV 401