Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., Type II secretion system protein E from Xanthobacter sp. DMC5

 Score =  343 bits (879), Expect = 1e-98
 Identities = 219/543 (40%), Positives = 299/543 (55%), Gaps = 27/543 (4%)

Query: 29  ASGTSVP--EALLELSIFHAQELTEQLSHIFGLPETDLSRYDYANLCQQLGLRELITRYD 86
           A+GT V     + E S   A +  ++++  + LP   L     A           +    
Sbjct: 26  AAGTLVRPLRQVWEASELTAGDFADEVARFYRLPRIALPELMAAPSLVSHFTPRFLREMT 85

Query: 87  ALPIAKQGNLLLLAVSDPTLLQAEEEFRFATGLQVELALADHRALQAAIRRLYGRSIQGA 146
            LP         LAV DPT            G +V  A+A    +  A+    G     A
Sbjct: 86  VLPFRAADGTACLAVGDPTDETVVRAAEIVLGGKVTRAVASFEDIATALAERLGADEAAA 145

Query: 147 ANQGKEISQDELANLVKVSDDELQSIEDLSQDDSPVSRFINQVLLDAVRKGASDIHFEPY 206
               +E +    A     ++D++ S+ DL+   +PV R +N +   A+   ASDIH  P+
Sbjct: 146 ----REAAGPATAR----AEDDIDSLRDLASG-APVVRAVNDLFDKAMELRASDIHIGPF 196

Query: 207 ENQYRIRLRCDGILVETQQPASHLSRRLAARIKILSKLDIAERRLPQDGRIKLRLSRDTA 266
                +RLR DG+L      A  L + + +RIKIL+ LDIAERRLPQDG  +L+L RD  
Sbjct: 197 RTGLEVRLRIDGMLRPIHALADVLPQAVISRIKILAGLDIAERRLPQDGAARLKLGRDE- 255

Query: 267 IDMRVSTLPTLWGEKIVLRLLDSSAANLDIDKLGYNPQQKQLYLNALKRPQGMILMTGPT 326
           ID+RV+ +PT  GE  V+RLL      L +DKLG  P  ++  +  L  P GM+++TGPT
Sbjct: 256 IDVRVAIMPTQHGESAVIRLLARDRGVLTVDKLGLAPHDRETLMKLLALPHGMVVVTGPT 315

Query: 327 GSGKTVSLYTGLRILNTSQINISTAEDPVEINLSGINQVQVQPKIGFGFAEALRSFLRQD 386
           GSGKT +L T L +LN     I T EDPVE  + G+ Q QV+P+IG  FA ALRSFLRQD
Sbjct: 316 GSGKTTTLATILSVLNEPTRKILTIEDPVEYEIRGVFQSQVRPQIGLTFAAALRSFLRQD 375

Query: 387 PDVVMVGEIRDLETAEIAVKAAQTGHLVLSTLHTNSAAETVIRLANMGVEPFNLASSLSL 446
           PDV+MVGE+RD ETA IAV AA TGHLVL+TLHT++AA +V R+ ++GVE F L S+L  
Sbjct: 376 PDVIMVGEVRDPETAHIAVHAALTGHLVLTTLHTDTAAASVPRMLDLGVEGFLLKSTLRA 435

Query: 447 IIAQRLARRLCKHCKIAVRPSALLQSQFAFQP---------NEILYEANAAGCNECTG-G 496
           +IAQRL R+LC+ CK   RP  L  S     P          E +YE    GC  C G G
Sbjct: 436 VIAQRLVRQLCERCK---RPHTLSSSDVRDDPRYAALGLKAGETVYE--PVGCERCGGAG 490

Query: 497 YSGRVGIYEVMAFNTELAEAIMQRASIHQIERLAKANGMQTLQESGLEKLREGITSFAEL 556
           Y GR+G++EV+  + ++ E I + A    ++R A A GM T+ + G+ K R G+TS AE+
Sbjct: 491 YRGRIGVFEVLTLSDDIREMIDRHAGAAALDRAAIAGGMTTMLDDGVAKCRAGLTSAAEV 550

Query: 557 QRV 559
            RV
Sbjct: 551 LRV 553