Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., type II secretion system protein E from Pseudomonas simiae WCS417

 Score =  308 bits (789), Expect = 4e-88
 Identities = 191/563 (33%), Positives = 299/563 (53%), Gaps = 31/563 (5%)

Query: 2   LTNLVAILRQAELISATQEQAVVTQVSASGTSVPEALLELSIFHAQELTEQLSHIFGLP- 60
           L  L+  L +  LI+    Q + + + AS T  P   +       + LTE L+   G P 
Sbjct: 9   LHQLLPALVEGRLITPEIAQRL-SALPASNTLHPLESIAAQGLCLETLTEWLAQRAGQPY 67

Query: 61  -ETDLSRYDYANLCQQLGLRELITRYDALPIAKQGNLLLLAVSDPTLLQAEEEFRFATGL 119
              D  + D A +   +       R+  L +A     + +A + P +   E         
Sbjct: 68  LRIDPLKIDVATVVPLMS-HAFAQRHAILAVAVDAQTVTVASAQPHVTSWEAGLSQVLKR 126

Query: 120 QVELALADHRALQAAIRRLY--GRSIQGAANQGKEISQDELANLVKVSDDELQSIEDLSQ 177
            ++  +A+ + +   I   Y   +S+ GA  +       +L NL     +          
Sbjct: 127 SIKRVVANPQDITRCIGEFYRLAKSVSGADQKVVAAGNVDLLNLGAREQEP-------DA 179

Query: 178 DDSPVSRFINQVLLDAVRKGASDIHFEPYENQYRIRLRCDGILVETQQPASHLSRRLAAR 237
           +D+ +   ++ +L  A  + ASDIH EP   Q R+R R DG+L +  Q    ++  + +R
Sbjct: 180 NDAHIVNIVDWLLQYAFAQRASDIHIEPCREQGRVRFRIDGLLHDVYQFPPQVTMAVVSR 239

Query: 238 IKILSKLDIAERRLPQDGRIKLRLSRDTAIDMRVSTLPTLWGEKIVLRLLDSSAANLDID 297
           +K L ++++AE+R PQDGR+K +      +++R+STLPT +GEK+VLR+ D        D
Sbjct: 240 LKSLGRMNVAEKRRPQDGRVKTKSPTGAEVELRLSTLPTAFGEKLVLRIFDPQVLLKGFD 299

Query: 298 KLGYNPQQKQLYLNALKRPQGMILMTGPTGSGKTVSLYTGLRILNTSQINISTAEDPVEI 357
           +LG +   ++ + +  ++  G+IL+TGPTGSGKT +LYT LR L T ++N+ T EDP+E+
Sbjct: 300 QLGLSADDQRRWQSMTRQTHGIILVTGPTGSGKTSTLYTTLRQLATREVNLCTVEDPIEM 359

Query: 358 NLSGINQVQVQPKIGFGFAEALRSFLRQDPDVVMVGEIRDLETAEIAVKAAQTGHLVLST 417
                NQ+QVQ  I   FA  +R+ LRQDPD++M+GEIRD ETAE+A++AA TGHLVLST
Sbjct: 360 VEPTFNQMQVQHNIDLTFASGIRALLRQDPDIIMIGEIRDQETAEMAIQAALTGHLVLST 419

Query: 418 LHTNSAAETVIRLANMGVEPFNLASSLSLIIAQRLARRLCKHCKIAVRPSALLQSQFAFQ 477
           LHTN A   + RL  +G+  + + ++L  ++AQRL R LC HCK  +  +          
Sbjct: 420 LHTNDAPSAISRLQELGIAHYLIKATLLGVMAQRLVRVLCPHCKRTLGDA---------- 469

Query: 478 PNEILYEANAAGCNEC-TGGYSGRVGIYEVMAFNTELAEAIMQRASIHQIERLAKANGMQ 536
                    A GC EC   GY GR G+YE+M  N  L   I   A +H + + A A GM 
Sbjct: 470 -------HEAVGCGECRQSGYRGRAGVYEIMVLNEALKTLITPGADLHALRQKAIAQGMC 522

Query: 537 TLQESGLEKLREGITSFAELQRV 559
           +L+ +G++K+  G+T+ AE+ RV
Sbjct: 523 SLRMAGVKKVEAGLTTMAEVLRV 545