Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 563 a.a., general secretion pathway protein GspE from Pseudomonas simiae WCS417

 Score =  363 bits (932), Expect = e-104
 Identities = 210/483 (43%), Positives = 301/483 (62%), Gaps = 29/483 (6%)

Query: 85  YDALPIA-KQGNLLLLAVSDPTLLQAEEEFRFATGLQVELALADHRALQAAIRRLYGRSI 143
           Y  +P+   QG L +LA ++P  L   +   +A  + V LA+     +   I R YG   
Sbjct: 96  YQVVPMGWTQGGLRVLA-ANPAQLYPFQALAYACQVPVWLAIGPRNEVDTLIERYYG--- 151

Query: 144 QGAANQGKEISQ-DELANLVKVSDDELQSIEDLSQDDSPVSRFINQVLLDAVRKGASDIH 202
           QG +  G  I   DE       ++++++ ++D++ + +PV R +N +L  AV + ASDIH
Sbjct: 152 QGRSAMGTLIENLDEQGG----AEEDIEHLKDMASE-APVIRLVNLILQRAVEQRASDIH 206

Query: 203 FEPYENQYRIRLRCDGILVETQQPASHLSRRLAARIKILSKLDIAERRLPQDGRIKLRLS 262
            EP+ENQ ++R R DG+L + + P +  S  + +R+KI+++LDIAERRLPQDGRI LR+ 
Sbjct: 207 IEPFENQLKVRYRIDGVLHDAEAPPASSSAAVISRVKIMARLDIAERRLPQDGRIMLRI- 265

Query: 263 RDTAIDMRVSTLPTLWGEKIVLRLLDSSAANLDIDKLGYNPQQKQLYLNALKRPQGMILM 322
           +   +D+RVST+PT +GE +VLRLLD      D   LG++ Q+   +L+ L+RP G++L+
Sbjct: 266 QGKELDLRVSTVPTSFGESVVLRLLDRQTVQFDFPSLGFDGQRLASFLDLLERPHGILLV 325

Query: 323 TGPTGSGKTVSLYTGLRILNTSQINISTAEDPVEINLSGINQVQVQPKIGFGFAEALRSF 382
           TGPTGSGKT +LYT L  LNT++  I T EDPVE  L GINQ+QV+P IG  FA ALRS 
Sbjct: 326 TGPTGSGKTTTLYTALSRLNTTERKIITVEDPVEYQLEGINQIQVKPAIGLDFAGALRSI 385

Query: 383 LRQDPDVVMVGEIRDLETAEIAVKAAQTGHLVLSTLHTNSAAETVIRLANMGVEPFNLAS 442
           +RQDPDV+M+GEIRDLET  IA++++ TGHLVLSTLHTNSAA ++ RL +MGVE + +AS
Sbjct: 386 VRQDPDVIMIGEIRDLETCRIAIQSSLTGHLVLSTLHTNSAAASITRLMDMGVESYLIAS 445

Query: 443 SLSLIIAQRLARRLCKHCKIAVRPSALLQSQFAFQPNEILYEANAAGCNE------CTGG 496
           ++S I+AQRL RRL    ++A              P E++ E       E        G 
Sbjct: 446 TVSGILAQRLVRRLDPVTRVAFE-----------APPELIAEHGLDRLTEQRPILLYRGD 494

Query: 497 YSGRVGIYEVMAFNTELAEAIMQRASIHQIERLAKANGMQTLQESGLEKLREGITSFAEL 556
           Y GR  + E++  N EL   +M+ A    +E+ A+  G++TL E GL +   GITS  E+
Sbjct: 495 YHGRSALTELLVMNDELRSLLMRHADAATLEQAARRAGLRTLYEEGLRQALAGITSLEEV 554

Query: 557 QRV 559
            RV
Sbjct: 555 LRV 557