Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 513 a.a., General secretion pathway protein E from Sphingobium sp. HT1-2

 Score =  355 bits (912), Expect = e-102
 Identities = 210/487 (43%), Positives = 289/487 (59%), Gaps = 26/487 (5%)

Query: 84  RYDALPIAKQGNLLLLAV---SDPTLLQAEE-------EFRFATGLQVELALADHRALQA 133
           ++  + + + G  L +AV   SDP +L           + RF    Q +  L+DH A++ 
Sbjct: 28  KHGVVMLPQDGERLSIAVREGSDPRVLLEVRRHLARSFDVRFVEAPQFDRHLSDHYAMEG 87

Query: 134 AIRRLYGRSIQGAANQGKEISQDELANLVKVSDDELQSIEDLSQDDSPVSRFINQVLLDA 193
           +   + G SI   A++      D LA  +  +DD L S      DD+P  R IN ++ +A
Sbjct: 88  SAAAMAG-SIDVGADE-----LDILAADIPTADDLLDSA-----DDAPAIRLINGIIAEA 136

Query: 194 VRKGASDIHFEPYENQYRIRLRCDGILVETQQPASHLSRRLAARIKILSKLDIAERRLPQ 253
            R+G SDIH EPYE    +R+R DG+L ET +   H++  + +RIK++++LDIAERR+PQ
Sbjct: 137 ARQGVSDIHIEPYETGLIVRMRVDGVLRETLRMPPHVAPVVVSRIKVMARLDIAERRVPQ 196

Query: 254 DGRIKLRLSRDTAIDMRVSTLPTLWGEKIVLRLLDSSAANLDIDKLGYNPQQKQLYLNAL 313
           DGRI L L     +D+RVSTLP+  GE++VLR+LD   A + +D LG      +++   L
Sbjct: 197 DGRIGLTLG-GKLLDVRVSTLPSRAGERVVLRILDKENAGITLDLLGMTGAPDRIFREGL 255

Query: 314 KRPQGMILMTGPTGSGKTVSLYTGLRILNTSQINISTAEDPVEINLSGINQVQVQPKIGF 373
             P G+IL+TGPTGSGKT +LY GLR LN    NI T EDPVE  + G+ Q QV  K+G 
Sbjct: 256 SEPNGIILVTGPTGSGKTTTLYAGLRNLNDGSRNILTVEDPVEYAMEGVGQTQVNAKVGL 315

Query: 374 GFAEALRSFLRQDPDVVMVGEIRDLETAEIAVKAAQTGHLVLSTLHTNSAAETVIRLANM 433
            FA  LR+ LRQDPDVVMVGEIRD ETAEIAV+A+ TGHLVLST+HTN A   + R+ +M
Sbjct: 316 TFAAGLRAILRQDPDVVMVGEIRDRETAEIAVQASLTGHLVLSTVHTNDAVGAITRMRDM 375

Query: 434 GVEPFNLASSLSLIIAQRLARRLCKHCKIAVRPSALLQSQFAFQPNEILYEANAAGCNEC 493
            VEPF LAS+L  ++AQRL RRLC+HC+  V+      +   F P  I+Y A   GC+EC
Sbjct: 376 RVEPFLLASTLRAVVAQRLVRRLCQHCREPVQADKSASALLGFDPGTIIYRAR--GCDEC 433

Query: 494 TG-GYSGRVGIYEVMAFNTELAEAIMQRASIHQIERLAKANGMQTLQESGLEKLREGITS 552
            G GY GR+G++E +  +  +   I        I R A  N    L  +    +R+G T+
Sbjct: 434 NGTGYKGRIGVFEAIRVDDTIRRLINDGGDESLIARHAFLNA-PNLGSAARALVRDGQTT 492

Query: 553 FAELQRV 559
             E  RV
Sbjct: 493 AEEAIRV 499