Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., Type II secretion system protein from Pseudomonas putida KT2440

 Score =  294 bits (753), Expect = 5e-84
 Identities = 174/479 (36%), Positives = 274/479 (57%), Gaps = 30/479 (6%)

Query: 84  RYDALPIAKQGNLLLLAVSDPTLLQAEEEFRFATGLQVELALADHRALQAAIRRLY--GR 141
           R+  L +A   + + +A + P     + +   + G  +   LA  + ++ + +  +   +
Sbjct: 104 RHGILIVAADASSVTVASAQPFQDDWQADLARSLGRSIRRVLASPQQIRQSAQSFHRLAQ 163

Query: 142 SIQGAANQGKEISQDELANLVKVSDDELQSIEDLSQDDSPVSRFINQVLLDAVRKGASDI 201
           S++GA  Q +  S  EL  L+++   + ++    S DD+ +   ++ +L  A+ + ASDI
Sbjct: 164 SVKGAQYQ-QSASLGELEQLLELGKRQAEA----SADDAHIVHIVDWLLQYAIEQRASDI 218

Query: 202 HFEPYENQYRIRLRCDGILVETQQPASHLSRRLAARIKILSKLDIAERRLPQDGRIKLRL 261
           H EP   Q ++R R DG+L       + ++  L +R+K L ++D+AE+R PQDGR++ RL
Sbjct: 219 HLEPRREQGQLRYRIDGLLHTVYAFPAGVTLALVSRLKHLGRMDVAEKRRPQDGRLQSRL 278

Query: 262 SRDTAIDMRVSTLPTLWGEKIVLRLLDSSAANLDIDKLGYNPQQKQLYLNALKRPQGMIL 321
                +++R+STLPT +GEK+VLRL D        D+LG + QQ   +   L++ QG+IL
Sbjct: 279 PGGGEVELRLSTLPTPFGEKLVLRLFDPHQLQEGFDRLGLHGQQLAQWQRLLRQRQGIIL 338

Query: 322 MTGPTGSGKTVSLYTGLRILNTSQINISTAEDPVEINLSGINQVQVQPKIGFGFAEALRS 381
           +TGPTGSGKT +LYT L++L T Q+N+ T EDP+E      NQ+QVQP +  GFA A+R+
Sbjct: 339 VTGPTGSGKTSTLYTSLKLLATPQVNLCTIEDPIERLEPAFNQLQVQPALDLGFANAVRA 398

Query: 382 FLRQDPDVVMVGEIRDLETAEIAVKAAQTGHLVLSTLHTNSAAETVIRLANMGVEPFNLA 441
            LRQDPD++M+GEIRD ETA +AV+AA TGHLVLSTLHTN A   + RL  +GV  + + 
Sbjct: 399 MLRQDPDIIMIGEIRDRETALVAVQAALTGHLVLSTLHTNDACAAITRLQELGVADYLIK 458

Query: 442 SSLSLIIAQRLARRLCKHCKIAVRPSALLQSQFAFQPNEILYEANAAGCNECTG-GYSGR 500
           ++L  ++AQRL R +C  C+                        ++A C  C G G+ GR
Sbjct: 459 ATLIGVMAQRLVRTVCTDCQ----------------------TGSSATCRACRGTGFQGR 496

Query: 501 VGIYEVMAFNTELAEAIMQRASIHQIERLAKANGMQTLQESGLEKLREGITSFAELQRV 559
            G++E++  +  L   I   A +  + R A A+G+  L+  G  K+  G T   E+ RV
Sbjct: 497 TGLFELLEPSDTLRALIGPDADLTCLRRQALADGLVDLRRCGEAKVAAGQTRAEEVLRV 555