Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., type II secretion system protein GspE from Serratia liquefaciens MT49

 Score =  382 bits (981), Expect = e-110
 Identities = 218/488 (44%), Positives = 299/488 (61%), Gaps = 29/488 (5%)

Query: 78  LRELITRYDALPIAKQGNLLLLAVSDPTLLQAEEEFRFATGLQVELALADHRALQAAIRR 137
           +  L  RY AL +++    L +A++           RFATG ++ L       L+  + R
Sbjct: 9   IHTLCQRYQALALSEDDQCLNVALTTEAPQALLSALRFATGKRIHLEQWPAARLELELNR 68

Query: 138 LYGRSIQGAANQGKEISQDELANLVKVSDDELQSIEDLSQDDSPVSRFINQVLLDAVRKG 197
              R  QG          D L         +  S+ D S  D+PV +FINQ L  A+++ 
Sbjct: 69  ---RQKQG----------DRLEQPTSEKQFDAASLNDDS--DAPVVQFINQTLRIAIQRR 113

Query: 198 ASDIHFEPYENQYRIRLRCDGILVETQQPASHLSRRLAARIKILSKLDIAERRLPQDGRI 257
           ASDIHFEPY+   RIRLR DG+L     P   L+ RL AR+KI+ +LDIAERRLPQDG++
Sbjct: 114 ASDIHFEPYQQTLRIRLRIDGVLQVITSPPFTLAARLTARLKIMGQLDIAERRLPQDGQL 173

Query: 258 KLRLSRDTAIDMRVSTLPTLWGEKIVLRLLDSSAANLDIDKLGYNPQQKQLYLNALKRPQ 317
            +RL  + +  MR++TLPTL GEK+VLR+L +    L +D+LG +P     + +AL  PQ
Sbjct: 174 SVRLD-NASYSMRIATLPTLHGEKVVLRILQTERQELPLDRLGMDPTALVQFSSALSCPQ 232

Query: 318 GMILMTGPTGSGKTVSLYTGLRILNTSQINISTAEDPVEINLSGINQVQVQPKIGFGFAE 377
           GMIL+TGPTGSGKTV+LY GLR LN +Q N+ + EDP+EI L GINQ Q   K    F+ 
Sbjct: 233 GMILVTGPTGSGKTVTLYGGLRQLNDAQSNLCSVEDPIEIPLFGINQTQTNAKTELDFSR 292

Query: 378 ALRSFLRQDPDVVMVGEIRDLETAEIAVKAAQTGHLVLSTLHTNSAAETVIRLANMGVEP 437
            LR+ LRQDPDV+M+GEIRD ETAEIAVKAAQTGHLVLSTLHTNS +ET+ RL +MG+  
Sbjct: 293 VLRALLRQDPDVIMIGEIRDRETAEIAVKAAQTGHLVLSTLHTNSTSETLTRLTHMGIPG 352

Query: 438 FNLASSLSLIIAQRLARRLCKHCK----IAVR-PSALLQSQFAFQPNEILYEANAAGCNE 492
           + +A+ L L+IAQRL R+LC HC+    + VR PSA+  +         L    A GC  
Sbjct: 353 YLIAACLKLVIAQRLVRKLCSHCRYQQSLPVRFPSAIWATP--------LLPWKADGCEH 404

Query: 493 CTGGYSGRVGIYEVMAFNTELAEAIMQRASIHQIERLAKANGMQTLQESGLEKLREGITS 552
           C  GY GR G+YE++    E+   +++ A+   +  +A+  G  TL ++GL  + +G+TS
Sbjct: 405 CFSGYYGRTGVYELLTITPEVQAGLLEGAAPSMLAEIARQQGQTTLLQAGLTLVAQGVTS 464

Query: 553 FAELQRVL 560
             E+ R++
Sbjct: 465 LEEVYRIV 472