Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 497 a.a., putative type II secretion protein GspE from Escherichia coli BL21

 Score =  335 bits (858), Expect = 3e-96
 Identities = 183/396 (46%), Positives = 257/396 (64%), Gaps = 5/396 (1%)

Query: 167 DELQSIEDL--SQDDSPVSRFINQVLLDAVRKGASDIHFEPYENQYRIRLRCDGILVETQ 224
           +EL   EDL  S DD+P+ + IN +L +A+++GASDIH E +E    IR R DG L E  
Sbjct: 100 EELPETEDLLESDDDAPIIKLINAMLAEAIKEGASDIHIETFEKSLVIRFRVDGTLHEML 159

Query: 225 QPASHLSRRLAARIKILSKLDIAERRLPQDGRIKLRLSRDTAIDMRVSTLPTLWGEKIVL 284
           +P   L+  L +RIK++++LDIAE+R+PQDGRI L L    AID+RVST+P+ WGE++VL
Sbjct: 160 RPGRKLASLLVSRIKVMARLDIAEKRVPQDGRIALLLG-GRAIDVRVSTMPSAWGERVVL 218

Query: 285 RLLDSSAANLDIDKLGYNPQQKQLYLNALKRPQGMILMTGPTGSGKTVSLYTGLRILNTS 344
           RLLD + A L +++LG + +        L +P G+ L+TGPTGSGK+ +LY GL+ LN  
Sbjct: 219 RLLDKNQARLTLERLGLSHELTAQLRQLLHKPHGIFLVTGPTGSGKSTTLYAGLQELNNH 278

Query: 345 QINISTAEDPVEINLSGINQVQVQPKIGFGFAEALRSFLRQDPDVVMVGEIRDLETAEIA 404
             NI T EDP+E  + GI Q QV  ++G  FA  LR+ LRQDPDVVMVGEIRD ETAEIA
Sbjct: 279 SRNILTVEDPIEYMIEGIGQTQVNTRVGMTFARGLRAILRQDPDVVMVGEIRDTETAEIA 338

Query: 405 VKAAQTGHLVLSTLHTNSAAETVIRLANMGVEPFNLASSLSLIIAQRLARRLCKHCKIAV 464
           V+A+ TGHLVLSTLHTN+A   + RL +MGVEPF L+SSL+ ++AQRL R LC  C+ A+
Sbjct: 339 VQASLTGHLVLSTLHTNTAVGAITRLQDMGVEPFLLSSSLTGVMAQRLVRTLCPDCRQAL 398

Query: 465 RPSALLQSQFAFQPNEILYEANAAGCNECT-GGYSGRVGIYEVMAFNTELAEAIMQRASI 523
             +   +          +   +  GC  C   G+ GR  I+E++  +  L + I ++A  
Sbjct: 399 PATDEEKRLLGITDARTVTLYHPQGCPACNHKGFRGRTAIHELIVVDATLRDLIHRQAGE 458

Query: 524 HQIERLAKANGMQTLQESGLEKLREGITSFAELQRV 559
            ++ER  + +    ++ +G+EK+  G TS  E+ RV
Sbjct: 459 LELERYVRQHS-AGIRSNGIEKVLAGETSLDEVLRV 493