Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., N-acetylmuramoyl-L-alanine amidase AmiD from Xanthobacter sp. DMC5

 Score = 85.9 bits (211), Expect = 5e-22
 Identities = 64/168 (38%), Positives = 81/168 (48%), Gaps = 24/168 (14%)

Query: 14  VPSPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSFFKVIAKMRVS 73
           VPSP+  VR  S D  +LV+H   +               G  DA         A+  VS
Sbjct: 18  VPSPNFGVRRSSVD--MLVLHYTGM---------------GSADAAIELLRTPAAE--VS 58

Query: 74  AHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIEL--EGSDF--VPYTDAQ 129
            H VIR DG +VQ V    RAWHAG+SS+ G    N  SIGIE+   G DF   P+ D Q
Sbjct: 59  CHYVIREDGSIVQMVAEGARAWHAGLSSWEGITDTNSRSIGIEIVNGGHDFGLPPFPDVQ 118

Query: 130 YQALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDWRRFRA 177
              +  L+Q ++ R+  I   R+  H  IAP RK DPG  F W+   A
Sbjct: 119 IARVIALSQDIIARHA-IRADRVLAHSDIAPARKRDPGERFPWQALHA 165