Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 258 a.a., N-acetylmuramoyl-L-alanine amidase from Pseudomonas simiae WCS417

 Score = 71.6 bits (174), Expect = 1e-17
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 33/173 (19%)

Query: 13  KVPSPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSFFKVIAKMRV 72
           ++ + H  V HD+  +  ++VH  S                     N      ++   +V
Sbjct: 21  RMDTSHPSVNHDNR-VQFVIVHYTS--------------------TNLERSLALLTHGQV 59

Query: 73  SAHCVIRRD--GEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIEL---------EGSD 121
           S+H +I  D  G + + V    RAWHAG S + GR   N  SIGIE+          G  
Sbjct: 60  SSHYLIGDDASGTIYKLVDESQRAWHAGESEWMGRTWLNSSSIGIEIVNPGYKDTPTGRV 119

Query: 122 FVPYTDAQYQALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDWRR 174
           + PY++AQ ++L  L + +  R   I    I GH  IAPLRK DPG +F W+R
Sbjct: 120 WYPYSEAQVKSLVVLLKDISKRNG-IDPKNIIGHSDIAPLRKLDPGPLFPWKR 171