Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 232 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from Sphingobium sp. HT1-2

 Score = 82.4 bits (202), Expect = 5e-21
 Identities = 57/164 (34%), Positives = 81/164 (49%), Gaps = 24/164 (14%)

Query: 13  KVPSPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSFFKVIAKMRV 72
           + PSP+ D R  S  I++LV+H   +P                 DA     +   A+ +V
Sbjct: 8   ETPSPNYDER--SLPITMLVLHYTGMP-----------------DAASAINWLANAESKV 48

Query: 73  SAHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIELEGS----DFVPYTDA 128
           SAH V+  DG++++ V    RAWHAG S + G    N  SIGIE+        + P+ +A
Sbjct: 49  SAHYVVTEDGQIIRMVAEDKRAWHAGRSHWRGIDDVNSASIGIEIVNPGHEWGYRPFPEA 108

Query: 129 QYQALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDW 172
           Q  +L  L   ++ R+  IT   I GH  IAP RK DPG +F W
Sbjct: 109 QMGSLIPLVHDIVQRH-RITRGNIVGHSDIAPARKQDPGELFPW 151