Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 186 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Pseudomonas sp. DMC3

 Score =  196 bits (498), Expect = 2e-55
 Identities = 98/176 (55%), Positives = 121/176 (68%), Gaps = 1/176 (0%)

Query: 4   SQGWYRLARKVPSPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSF 63
           + GW    +  PSP+ + R   E +SLLV+HNISLPP QF    +++FF   LD  +H +
Sbjct: 6   ASGWCHGVQICPSPNFNERPAGE-VSLLVIHNISLPPAQFATGKVQEFFQNRLDVTEHPY 64

Query: 64  FKVIAKMRVSAHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIELEGSDFV 123
           F  IA +RVSAH +I RDG+V QFV    RAWHAGVS F GR  CND+S+GIELEG+D +
Sbjct: 65  FAGIADLRVSAHFLIERDGKVTQFVSCLARAWHAGVSVFEGRETCNDFSVGIELEGTDDL 124

Query: 124 PYTDAQYQALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDWRRFRAGL 179
           P+TD QY+ALT LT+ L  R+P IT  RI GH  IAP RKTDPG  FDW R+RA L
Sbjct: 125 PFTDEQYRALTALTRQLQKRFPAITAQRICGHSDIAPGRKTDPGPAFDWARYRAAL 180