Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 207 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  176 bits (447), Expect = 2e-49
 Identities = 91/175 (52%), Positives = 112/175 (64%), Gaps = 3/175 (1%)

Query: 6   GWYRLARKVPSPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSFFK 65
           GW R AR  PSP+   R    +I L+V+H+ISLPPG +GGP +EQ F   LD + H +F+
Sbjct: 18  GWLRTARHSPSPNFGPRPGDAEIDLIVIHSISLPPGVYGGPEVEQLFTNRLDWDAHPYFE 77

Query: 66  VIAKMRVSAHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIELEGSDFVPY 125
            I  M VS+H  +RRDGEVVQFV    RAWHAG S + GR  CND SIGIELEG +   +
Sbjct: 78  QIRGMEVSSHFFVRRDGEVVQFVDADARAWHAGASCWRGRHNCNDDSIGIELEGLEGERF 137

Query: 126 TDAQYQALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDWRRFRAGLK 180
             AQY AL  L   L+ RYP   +  I GH++IAP RK DPG  FDW R +A L+
Sbjct: 138 EAAQYTALARLCTQLVRRYP---VRHIAGHEHIAPGRKQDPGPGFDWSRLQADLQ 189