Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., N-acetylmuramoyl-L-alanine amidase from Serratia liquefaciens MT49

 Score = 79.7 bits (195), Expect = 4e-20
 Identities = 53/136 (38%), Positives = 69/136 (50%), Gaps = 18/136 (13%)

Query: 61  HSFFKVIAKMRVSAHCVIRRDGEVVQ-------FVPFHLRAWHAGVSSFAGRAKCNDYSI 113
           HS  K +    VSAH ++     +VQ        VP  LRAWHAG S++ GR   ND SI
Sbjct: 58  HSSLKTLTDEHVSAHYLLPAHPPLVQGKPVAFQLVPEALRAWHAGASTWRGRTNLNDTSI 117

Query: 114 GIELEGSDF---------VPYTDAQYQALTELTQALMVRYPHITLPRITGHQYIAPLRKT 164
           GIE+    F          PYT  Q   L  L++ ++ RY  I    + GH  IAP RK 
Sbjct: 118 GIEIVNRGFNRTLLFTHWQPYTPQQIALLIPLSRDIIQRY-GIQPTDVVGHSDIAPQRKQ 176

Query: 165 DPGLVFDWRRF-RAGL 179
           DPG +F WR+  +AG+
Sbjct: 177 DPGPLFPWRQLAQAGI 192