Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., N-acetylmuramoyl-L-alanine amidase from Erwinia tracheiphila SCR3

 Score = 85.1 bits (209), Expect = 9e-22
 Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 18/136 (13%)

Query: 59  NQHSFFKVIAKMRVSAHCVI-----RRDGE--VVQFVPFHLRAWHAGVSSFAGRAKCNDY 111
           N     K + +  VSAH +I      ++G+  V+Q V  + RAWHAGVSS+ GR+  ND 
Sbjct: 35  NDEQSLKELTQGNVSAHYLIPEEPAMKNGKPVVLQLVDENKRAWHAGVSSWNGRSNLNDS 94

Query: 112 SIGIELEGSDFV----------PYTDAQYQALTELTQALMVRYPHITLPRITGHQYIAPL 161
           SIGIE+  S F           P+++ Q  A+  L + ++ RY  IT   + GH  IAPL
Sbjct: 95  SIGIEIVNSGFTDDVNGQRTWYPFSEKQITAVAALAKDIIHRY-QITPDNVIGHADIAPL 153

Query: 162 RKTDPGLVFDWRRFRA 177
           RK DPG +F W R  A
Sbjct: 154 RKQDPGKLFPWERLAA 169