Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., N-acetylmuramoyl-L-alanine amidase AmiD from Azospirillum sp. SherDot2

 Score = 80.1 bits (196), Expect = 3e-20
 Identities = 54/163 (33%), Positives = 76/163 (46%), Gaps = 24/163 (14%)

Query: 15  PSPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSFFKVI-AKMRVS 73
           PSP+   R D   + LL++H   +P                     H+  ++     +VS
Sbjct: 10  PSPNHGPRADGARVELLILHYTGMPTAA------------------HALERLCDPASQVS 51

Query: 74  AHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIEL--EGSDF--VPYTDAQ 129
           AH  +  DG V   VP   RAWHAG SS+ G    N  SIG+E+   G +F   P+   Q
Sbjct: 52  AHYTVDEDGTVYAHVPEDRRAWHAGRSSWRGAEDVNSRSIGVEIVNPGHEFGYRPFPPVQ 111

Query: 130 YQALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDW 172
             A+ EL   ++ R+  I    + GH  +AP RK DPG +FDW
Sbjct: 112 MAAVAELCLGIVARH-GIAAADVLGHSDVAPARKEDPGELFDW 153