Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 179 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Alteromonas macleodii MIT1002

 Score =  226 bits (577), Expect = 1e-64
 Identities = 112/176 (63%), Positives = 129/176 (73%), Gaps = 3/176 (1%)

Query: 8   YRLARKVPSPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSFFKVI 67
           Y  A+   SPH D R DS D+SLLV+HNISLPP QFG P I Q F G L+ ++H F+K I
Sbjct: 4   YNEAKYTASPHYDARPDSTDVSLLVIHNISLPPSQFGTPGIRQLFTGTLNPDEHPFYKEI 63

Query: 68  AKMRVSAHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIELEGSDFVPYTD 127
           A +RVSAHCVI R GEV QFVPF  RAWHAG+SSF GR++CNDY+IGIELEG+D +PYTD
Sbjct: 64  AGLRVSAHCVIYRTGEVEQFVPFEQRAWHAGLSSFQGRSRCNDYAIGIELEGTDTLPYTD 123

Query: 128 AQYQALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDWRRFR---AGLK 180
           AQY+ L ELT  +   YP ITL RI GH  IAP RKTDPG  FDW R+R   AG K
Sbjct: 124 AQYRTLGELTDFITRYYPRITLGRIVGHNDIAPGRKTDPGAAFDWARYRMRVAGFK 179