Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., tyrosine recombinase XerC from Rhodanobacter sp000427505 FW510-R12

 Score =  177 bits (448), Expect = 3e-49
 Identities = 111/297 (37%), Positives = 166/297 (55%), Gaps = 8/297 (2%)

Query: 7   PDQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYR-LDFISFAGLQEYQSW 65
           P    VEQ+L  +  ER  + +T+A YR DL+KLL +M Q Q    D +    ++ + + 
Sbjct: 2   PPAQQVEQWLARLAGERHASPHTLAGYRRDLAKLLRFMQQQQLAAFDALDANRMRTFIAG 61

Query: 66  LSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEAL 125
                  P S  R+LS+ R LF+ L RE    +DP   +  PK+  +LP+ L   +  AL
Sbjct: 62  EHRAGLAPKSLQRLLSSCRSLFRQLTREGRLTNDPLLGVRGPKVRRKLPQVLDVDEATAL 121

Query: 126 LSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPM 185
           +   D    L +RD+AMLEL Y++GLR++ELV L   +++L  G VRV+GKG K R+VP+
Sbjct: 122 VET-DSGGQLAVRDRAMLELFYSSGLRLSELVGLHWLDLNLDDGEVRVLGKGSKTRIVPV 180

Query: 186 GENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKL 245
           G +A+  +            G      VF    G  +  +T   R+   A+  GI  + +
Sbjct: 181 GRHAVAALRAL-----GAAEGMPADGPVFRGRGGAPINPRTVQLRMNKLALQQGIP-KHI 234

Query: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
            PH+LRH FA+H+L    DLR VQ LLGH+D++TTQIYTH+  + L ++++  HPRA
Sbjct: 235 HPHLLRHTFASHMLESSGDLRAVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRA 291