Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., Tyrosine recombinase XerD from Xanthobacter sp. DMC5

 Score =  210 bits (534), Expect = 4e-59
 Identities = 134/314 (42%), Positives = 183/314 (58%), Gaps = 29/314 (9%)

Query: 9   QGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSE 68
           QG V  FLD    ERG   NT+ +YR DL+ L +++A        I+ A  Q  + WL++
Sbjct: 9   QGPVALFLDMQAVERGAGANTLDAYRRDLTDLADFLAPRA-----IAAADTQAIRDWLAD 63

Query: 69  ---QNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEAL 125
              + +K T+ AR LSA+R+ F++L+ E  R DDP+A+L  P+    LPK L+  +V  L
Sbjct: 64  LSARGFKATTVARRLSAVRQFFRFLYAEGHRGDDPAAVLEGPRRGRPLPKVLTVEEVSTL 123

Query: 126 L------SAPDPQSPLELRDKA------------MLELLYATGLRVTELVSLTMENMSLR 167
           +      +A  P    E   KA            ++ELLYA+GLR++ELVSL       R
Sbjct: 124 IETAHARAAEVPAGEGEAAGKARAEMLKRRRTAAVVELLYASGLRISELVSLPAAAARAR 183

Query: 168 QGVVRVMGKGGKERLVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSS-RGQQMTRQT 226
              + V GKG KERLVP+ + A   +  +L   ++   G + S  +FPSS     +TRQ 
Sbjct: 184 GDAILVTGKGRKERLVPLSDPARAAMAAYLDARKAA--GLEASRWLFPSSGESGYVTRQQ 241

Query: 227 FWHRIKHYAVIAGIDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHV 286
               +K  A+ AG+D  KLSPHVLRHAFA+HLL +GADLRVVQ LLGH+D+STTQIYTHV
Sbjct: 242 AARDLKELALAAGLDPAKLSPHVLRHAFASHLLAHGADLRVVQTLLGHADVSTTQIYTHV 301

Query: 287 ATERLKQLHNEHHP 300
             ERLK +  + HP
Sbjct: 302 LDERLKSMVRDLHP 315