Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., Tyrosine recombinase XerC from Xanthobacter sp. DMC5

 Score =  129 bits (323), Expect = 1e-34
 Identities = 99/316 (31%), Positives = 157/316 (49%), Gaps = 20/316 (6%)

Query: 1   MSEALSPD-QGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYR------LDF 53
           ++ A +PD   +VE +L  +  ER L+  T+ +Y  DLS +L  +  +  +      L  
Sbjct: 16  LAAAAAPDVAAVVEGWLARLAHERRLSAKTLEAYARDLSVVLVRLTDHLGKRPTLPDLAA 75

Query: 54  ISFAGLQEYQSWLSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRL 113
           ++ A ++   +    +   P +  R+L+A R   ++L RE          + +PK+P  L
Sbjct: 76  LTPADVRAVLASRRAEGVAPRTLVRLLAAARSFGRHLEREGQGKVGALTAVRAPKVPKGL 135

Query: 114 PKDLSEAQVEALLSAPDPQSP------LELRDKAMLELLYATGLRVTELVSLTMENMSLR 167
           PK +S A   AL   PD ++       +  RD A++ LLY  GLR++E + LT   +S  
Sbjct: 136 PKPVSVAAARALAD-PDTRAGEAREAWVLARDAAVIGLLYGAGLRISEALGLTAGMLSSG 194

Query: 168 QGVVRVMGKGGKERLVPMGENAIEWIETFLQQGRSLLLGEQTSDI-VFPSSRGQQMTRQT 226
              + V GKG K R+VP+    +  +E +    R L       D  +F  ++G  ++ + 
Sbjct: 195 TTQITVTGKGNKTRMVPLIAPVLAAVEAY----RGLCPYPLAPDKPLFRGAKGGPLSPRI 250

Query: 227 FWHRIKHYAVIAGIDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHV 286
               ++      G+  +  +PH LRH+FATHLL+ G DLR +Q LLGH+ LSTTQIYT V
Sbjct: 251 VQLAVERMRGALGLP-DSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTQV 309

Query: 287 ATERLKQLHNEHHPRA 302
               L       HPRA
Sbjct: 310 DAAALMNAWRAAHPRA 325