Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., recombinase XerC from Pseudomonas simiae WCS417

 Score =  175 bits (443), Expect = 1e-48
 Identities = 106/282 (37%), Positives = 162/282 (57%), Gaps = 6/282 (2%)

Query: 22  ERGLAENTVASYRNDLSKLLEWMAQNQYRL-DFISFAGLQEYQSWLSEQNYKPTSKARML 80
           ER ++ +T+ +YR DL+K+L +  + Q      +    L+   + L +      S +R+L
Sbjct: 15  ERQVSPHTLEAYRRDLNKVLAYCEKQQISSWKALDIQSLRSLIARLHQAGQSSRSLSRLL 74

Query: 81  SAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPDPQSPLELRDK 140
           SA+R L+ YL+RE +   DP+  L  PK   RLPK L   +   LL        L  RD+
Sbjct: 75  SAVRGLYHYLNREGLCDHDPANGLSPPKGERRLPKTLDTDRALQLLDGAVEDDFLAHRDQ 134

Query: 141 AMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAIEWIETFLQQG 200
           A+LEL Y++GLR++EL  L ++ + L  G+V+V+GKG K R++P+G  A E ++ +L   
Sbjct: 135 AILELFYSSGLRLSELTGLNLDQLDLADGLVQVLGKGSKTRVLPVGRKAREALQLWLP-- 192

Query: 201 RSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVLRHAFATHLLN 260
              LL     D VF S +G+++  +    R+K  A       + L PH+LRH+FA+H+L 
Sbjct: 193 -LRLLTNPADDAVFVSQQGRRLGPRAIQVRVK--AAGERELGQNLHPHMLRHSFASHMLE 249

Query: 261 YGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
              DLR VQ LLGHSD+ TTQIYTH+  + L  +++  HPRA
Sbjct: 250 SSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHPRA 291