Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas simiae WCS417

 Score =  352 bits (903), Expect = e-102
 Identities = 176/294 (59%), Positives = 222/294 (75%), Gaps = 1/294 (0%)

Query: 8   DQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLS 67
           D  L+++FLD +W E+GL++NT  +YR+DL+    W+ +    L       + ++ +W  
Sbjct: 5   DHPLIDRFLDALWLEKGLSDNTRQAYRSDLALFNGWLQEKNLELVNAGRELILDHLAWRL 64

Query: 68  EQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLS 127
           EQNYKP S AR LS +R  ++YL REK+ A DP+  +  P+L   LPK LSEA VEALL+
Sbjct: 65  EQNYKPRSTARFLSGVRGFYRYLLREKLIAVDPTLQVDMPQLGRPLPKSLSEADVEALLA 124

Query: 128 APDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGE 187
           APD    +  RD+AMLE+LYA GLRVTEL+SLT+E ++LRQGV+RVMGKG KERLVPMGE
Sbjct: 125 APDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGE 184

Query: 188 NAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSP 247
            AI W+E +++  RS LLG + SD++FPS RG+QMTRQTFWHRIKH A +AGI  + LSP
Sbjct: 185 EAIVWVERYMRDARSELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIG-KALSP 243

Query: 248 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPR 301
           H LRHAFATHLLN+GADLRVVQMLLGHSDLSTTQIYTHVA  RL+ +H +HHPR
Sbjct: 244 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDMHAKHHPR 297