Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., Site-specific tyrosine recombinase XerC from Variovorax sp. SCN45

 Score =  163 bits (413), Expect = 4e-45
 Identities = 106/315 (33%), Positives = 167/315 (53%), Gaps = 17/315 (5%)

Query: 4   ALSPDQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQ 63
           A+S   G VE++L+ +  ER LA  TV  Y   L  L +  A+ +  LD +  A ++ + 
Sbjct: 17  AVSAASGWVEKYLEHVRVERRLAARTVELYAFHLKSLTDHAAEAKLSLDHVQTAHIRRWM 76

Query: 64  SWLSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVE 123
           + L     +P   A +LS  R  +++L  E +   +P   + +PK    LPK L      
Sbjct: 77  AQLHAAGREPRGIALVLSCWRSFYRWLGHEGLVGFNPVQDVHAPKAGKPLPKALGVDDAV 136

Query: 124 ALLSAPDPQSP--LELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVV-------RVM 174
            L    DP++    E RD A++E+LY  GLRV+EL  L  +  S  +G V        V+
Sbjct: 137 RLAELYDPEADPWTEARDSAIVEMLYGCGLRVSELTGLDAQASSSARGWVDLDAGDANVL 196

Query: 175 GKGGKERLVPMGENAIEWIETFLQQ-------GRSLLLGEQTSDIVFPSSRGQQMTRQTF 227
           GKG K R+VPMG  A E +  +L           S L   + +  +F S++G +M+ Q  
Sbjct: 197 GKGSKRRIVPMGSKASEAVRDWLAVRGDCAALATSHLRDPRAAAALFISAKGVRMSSQAV 256

Query: 228 WHRIKHYAVIAGIDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287
           W  ++  ++ AG+    + PH+LRH+FA+H+L   +DLR VQ LLGH+ +STTQ+YT + 
Sbjct: 257 WKLLRERSLKAGL-AAPVHPHMLRHSFASHVLQSSSDLRAVQELLGHASISTTQVYTRLD 315

Query: 288 TERLKQLHNEHHPRA 302
            + L ++++  HPRA
Sbjct: 316 FQHLAKVYDAAHPRA 330