Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., Site-specific tyrosine recombinase XerD from Variovorax sp. SCN45

 Score =  284 bits (727), Expect = 2e-81
 Identities = 155/304 (50%), Positives = 204/304 (67%), Gaps = 5/304 (1%)

Query: 1   MSEALSPDQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQ--YRLDFISFAG 58
           M+EA +     ++ F+D +W E GL++NT+A+YR DL+   +W+ ++     L       
Sbjct: 1   MTEAAAAPTPDIDDFIDALWLEDGLSKNTLAAYRRDLALFAQWLGEHSGGATLGTAKETD 60

Query: 59  LQEYQSWLSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLS 118
           LQ Y         K TS  R L+  +R +++  RE+  A DPS  L+  +   R  K LS
Sbjct: 61  LQAYMGARLSNRGKATSANRRLTVFKRYYRWALRERRIAADPSIRLMPARQMPRAIKTLS 120

Query: 119 EAQVEALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGG 178
           E QV+ LL+APD +SPL LRD+AMLEL+YA+GLRV+ELV+L   +MSL  GV+RV+GKG 
Sbjct: 121 EKQVDDLLAAPDVESPLGLRDRAMLELMYASGLRVSELVALKAIDMSLNDGVLRVLGKGS 180

Query: 179 KERLVPMGENAIEWIETFLQQGRSLLL-GEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVI 237
           KERLVP G  A  WIE +L++ R  +L G+QT D+ F ++RG  MTR  FW  +K +A  
Sbjct: 181 KERLVPFGGEARRWIERYLEESRPAILDGQQTPDL-FVTARGAGMTRVMFWIIVKKHATA 239

Query: 238 AGIDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNE 297
           AGI V  LSPH LRHAFATHLLN+G DLR VQ+LLGH+D+STT IYTHVA ERLKQLH +
Sbjct: 240 AGIHV-PLSPHTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHVARERLKQLHAK 298

Query: 298 HHPR 301
           HHPR
Sbjct: 299 HHPR 302