Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., tyrosine recombinase XerC from Vibrio cholerae E7946 ATCC 55056

 Score =  159 bits (401), Expect = 1e-43
 Identities = 95/292 (32%), Positives = 164/292 (56%), Gaps = 5/292 (1%)

Query: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQ-NQYRLDFISFAGLQEYQSWLSEQN 70
           +E+F   +  E+GL+  T  +Y+  L  + +++ Q        +  A +++       Q 
Sbjct: 17  LERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLVMQGKRQG 76

Query: 71  YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPD 130
            K +S A  LS++R    +L        +P+  + +P+    LPK+L   ++  LL   D
Sbjct: 77  MKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVTD 136

Query: 131 PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190
              PL +RD+A++EL+Y  GLR+ ELVS+ +++++L +G +RV+GKG KER V     A 
Sbjct: 137 -DDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIGKGNKERKVWFAGQAQ 195

Query: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250
           EW+  +L+    L    +T+  +F S  G +++ ++   R+  +     +    +SPH L
Sbjct: 196 EWVGKWLKLRSQLADSAETA--LFVSKLGTRISHRSVQKRMAEWGQKQAV-ASHISPHKL 252

Query: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
           RH+FATH+L    +LR VQ LLGH +++TTQIYTH+  + L Q++++ HPRA
Sbjct: 253 RHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRA 304