Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., Site-specific tyrosine recombinase XerC from Sphingobium sp. HT1-2

 Score =  117 bits (292), Expect = 4e-31
 Identities = 93/311 (29%), Positives = 154/311 (49%), Gaps = 20/311 (6%)

Query: 1   MSEALSPDQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYR------LDFI 54
           M++++ P   L E++   +  +R  + +TV +Y     +L+ ++A++Q +      L  +
Sbjct: 1   MTDSVPPS--LPERWRQHLSLDRRRSAHTVRAYVATAERLVAFLAEHQGQAVTAASLARL 58

Query: 55  SFAGLQEYQSWLSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLP 114
             A L+ Y +          S AR LSA+R   +++   + R       L  P++   LP
Sbjct: 59  EQADLRAYLASRRVDGIGNISAARELSAVRGFLKFVGGAEARVPQ----LKGPRVKRGLP 114

Query: 115 KDLSEAQVEAL---LSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVV 171
           + +S  +  AL   ++    +  +  RD A+L LLY  GLR+ E + L  + M L    +
Sbjct: 115 RPISPDEALALAGDVAEGAREDWIGARDWAVLLLLYGAGLRIGEAMGLMGDIMPLGD-TL 173

Query: 172 RVMGKGGKERLVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRI 231
           RV GK GK RLVP+       IE +  Q        +    +F  +RG  ++       +
Sbjct: 174 RVTGKRGKTRLVPLLPQVRSAIEAYADQ---CPWSPERDQPLFRGARGGPLSAALIRRSV 230

Query: 232 KHYAVIAGIDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERL 291
           +      G+  ++ +PH LRH+FATHLL  GADLR +Q LLGH+ L++TQ+YT V    L
Sbjct: 231 QGARGRLGLS-DRTTPHALRHSFATHLLGRGADLRSLQELLGHASLTSTQVYTQVDAAHL 289

Query: 292 KQLHNEHHPRA 302
             ++   HPRA
Sbjct: 290 LDVYRAAHPRA 300