Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., Site-specific tyrosine recombinase XerD from Sphingobium sp. HT1-2

 Score =  183 bits (465), Expect = 4e-51
 Identities = 117/305 (38%), Positives = 172/305 (56%), Gaps = 21/305 (6%)

Query: 5   LSPDQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQS 64
           +  D  L+++FL+ M  ERG + NT+ +YR DL    E +         ++ A       
Sbjct: 1   MDDDAVLIDRFLEMMAAERGASRNTLLAYRTDLQGAGEIVGG-------LAVASQDTLGR 53

Query: 65  WLSE-QNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVE 123
              E      ++ AR  SA+R  + +L  E +RAD+P A L  P     LPK LS  +V+
Sbjct: 54  LAGEWAPLAASTVARKASALRAFYAFLEEEGLRADNPGAALPRPVTRRPLPKILSSQEVD 113

Query: 124 ALLSAPDPQ------SPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKG 177
           +L +    +      +PL+LR  A++ELLY +GLR TELVSL  + +++ +  + + GKG
Sbjct: 114 SLFALIAQRVETAHPAPLDLRLSALIELLYGSGLRATELVSLPRKALAVDRPFLIIRGKG 173

Query: 178 GKERLVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVI 237
            +ERLVP+ + A   + T+L    +       S  +FPS +   ++R   +  +K  A  
Sbjct: 174 ARERLVPISDRARAAVATWLAHVPA------DSLWLFPSGK-SHVSRIRLYQLVKQLAAA 226

Query: 238 AGIDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNE 297
           AGI  E++SPHVLRHAFATHLL  GADLR +Q +LGH+D+ TTQIYTHV + RL +L N 
Sbjct: 227 AGIAPERVSPHVLRHAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRRLVELVNS 286

Query: 298 HHPRA 302
            HP A
Sbjct: 287 RHPLA 291