Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., Tyrosine recombinase XerD from Pseudomonas putida KT2440

 Score =  355 bits (910), Expect = e-103
 Identities = 178/294 (60%), Positives = 223/294 (75%), Gaps = 1/294 (0%)

Query: 8   DQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLS 67
           D  L++QFLD +W E+GL++NT  SYR+DL+    W+ ++   L       + ++ +W  
Sbjct: 5   DHPLIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEHSVSLPDAGRDLILDHLAWRL 64

Query: 68  EQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLS 127
           +Q YKP S AR LS +R  F+YL REK+ A DP+  +  P+L   LPK LSEA VEALL 
Sbjct: 65  DQGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQ 124

Query: 128 APDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGE 187
           APD    +  RD+AMLE+LYA GLRVTELVSLT++ ++LRQGV+RVMGKG KERLVPMGE
Sbjct: 125 APDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGE 184

Query: 188 NAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSP 247
            A+ W+E + + GR+ LL  + SD++FPS RG+QMTRQTFWHRIKH+A +AGID + LSP
Sbjct: 185 EAVVWLERYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGID-KPLSP 243

Query: 248 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPR 301
           H LRHAFATHLLN+GADLRVVQMLLGHSDLSTTQIYTHVA  RL+QLH +HHPR
Sbjct: 244 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297